Methanosarcina barkeri str. Fusaro

tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 62
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 63
Intron Summary (tRNAs with introns: 4)
Arg TCG
1		Met CAT
1		Tyr GTA
1		Trp CCA
1

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 3625
Number of Codons: 1131253

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 		GGC
1		CGC
1		TGC
1		3
GCT
2.09		GCC
1.43		GCG
0.59		GCA
2.69		6.8%
GlyACC
 		GCC
3		CCC
1		TCC
1		5
GGT
1.45		GGC
1.37		GGG
1.31		GGA
2.91		7.04%
ProAGG
 		GGG
1		CGG
1		TGG
1		3
CCT
1.67		CCC
0.66		CCG
0.65		CCA
0.94		3.92%
ThrAGT
 		GGT
1		CGT
1		TGT
2		4
ACT
1.72		ACC
1.3		ACG
0.64		ACA
1.8		5.46%
ValAAC
 		GAC
2		CAC
1		TAC
1		4
GTT
2.32		GTC
1.25		GTG
1.17		GTA
2.07		6.81%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 		GGA
1		CGA
1		TGA
1		ACT
 		GCT
1		 
 		 
 		4
TCT
1.4		TCC
1.14		TCG
0.61		TCA
1.51		AGT
1.19		AGC
1.05		 
 		 
 		6.9%
ArgACG
 		GCG
1		CCG
1		TCG
1		 
 		 
 		CCT
1		TCT
1		5
CGT
0.46		CGC
0.42		CGG
0.39		CGA
0.35		 
 		 
 		AGG
1.18		AGA
1.42		4.22%
LeuAAG
 		GAG
2		CAG
1		TAG
1		 
 		 
 		CAA
1		TAA
3		8
CTT
3.34		CTC
1.4		CTG
1.97		CTA
0.65		 
 		 
 		TTG
0.86		TTA
1.16		9.38%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 		GAA
2		 
 		 
 		2
TTT
2.67		TTC
1.61		 
 		 
 		4.28%
AsnATT
 		GTT
2		 
 		 
 		2
AAT
2.85		AAC
1.96		 
 		 
 		4.81%
Lys 
 		 
 		CTT
1		TTT
1		2
 
 		 
 		AAG
2.27		AAA
4.73		7%
AspATC
 		GTC
1		 
 		 
 		1
GAT
3.17		GAC
2.03		 
 		 
 		5.2%
Glu 
 		 
 		CTC
1		TTC
2		3
 
 		 
 		GAG
2.24		GAA
5.37		7.61%
HisATG
 		GTG
1		 
 		 
 		1
CAT
1.0		CAC
0.65		 
 		 
 		1.65%
Gln 
 		 
 		CTG
1		TTG
1		2
 
 		 
 		CAG
1.76		CAA
0.82		2.58%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 		GAT
2		CAT
1		TAT
 		3
ATT
3.29		ATC
2.08		 
 		ATA
2.36		7.73%
iMet/Met 
 		 
 		CAT
3/1		 
 		4
 
 		 
 		ATG
2.32		 
 		2.32%
TyrATA
 		GTA
1		 
 		 
 		1
TAT
2.2		TAC
1.41		 
 		 
 		3.61%
Supres 
 		TCA
 		CTA
 		TTA
 		0
Stop 
 		TGA
0.12		TAG
0.01		TAA
0.18		None
CysACA
 		GCA
4		 
 		 
 		4
TGT
0.6		TGC
0.6		 
 		 
 		1.2%
Trp 
 		 
 		CCA
1		 
 		1
 
 		 
 		TGG
1.04		 
 		1.04%
SelCys 
 		 
 		 
 		TCA
 		0
 
 		 
 		 
 		 
 		-