Structurally Aligned tRNAs (by Isotype & Anticodon)
Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.
Ala tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGATCAGG.GGAA.GATCGCTACCTTGGCATGGTAGAG...........GcCTCGGGTTCAATTCCCGACCGGTCCA... tRNA-Ala-GGC-1-1 Sc: 66.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTAGATCAGG.GGAA.GATCGTTACGTTCGCAACGTAAAG...........GcCGCGGGTTCAAATCCCGCCGAGTCCA... tRNA-Ala-CGC-1-1 Sc: 70.5 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTTGTAGATCAGATGGAA.GATCGCTGCCTTTGCAAGGCAGAG...........GcCCTGGGTTCGAATCCCAGCAAGTCCA... tRNA-Ala-TGC-1-1 Sc: 69.6
Arg tRNAs
>>>>>>>..>>>.............<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCCCGATAGGGTAGT..GGAtA.TCCTTGAGGCCTGCGG....................AGCCTTAG...........A.CCTGAGTTCAAGTCTCAGTCGGGACG... tRNA-Arg-GCG-1-1 Sc: 62.0 >>>>>>>..>>>.............<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGTCTGTAGTGTAGA..GGAtA.TCACTGGAGCCTCCGG....................AGCTCCGA...........A.CCTGGGTTCGATTCCCAGCAGACCTG... tRNA-Arg-CCG-1-1 Sc: 57.4 >>>>>>>..>>>.............<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTAGGGTAGCCaGGAtA.TCCTAATGGGCTTCGAagtaagataattacgaagatACCCATTG...........A.CTCGTGTTCGAATCGCGGCGGGCCCG... tRNA-Arg-TCG-1-1 Sc: 61.4 >>>>>>>..>>>.............<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTGGCCTAGCCaGGAtA.TGGCGGCAGCCTCCTA....................AGCTGTAA...........AtCGGGGGTTCAAATCCCTTCGCGCCCG... tRNA-Arg-CCT-1-1 Sc: 82.9 >>>>>>>..>>>.............<<<.>>>>>...........................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGCTTAGCCaGGAtA.TAGCGCTGGGCTTCTA....................ACCCAGAC...........GtCGGGGGTTCAAATCCCTTCGAGCCCG... tRNA-Arg-TCT-1-1 Sc: 84.2
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCTTTAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAAT...........GtCGTAGGTTCGAGCCCTGCAAGCGGCG... tRNA-Asn-GTT-1-1 Sc: 52.6 GCCGCTTTAACTCAGTTGGTAGAGTGTCTGGCTGTTAACCAGAAT...........GtCGTAGGTTCGAGCCCTGCAAGCGGCG... tRNA-Asn-GTT-1-2 Sc: 52.6
Asp tRNAs
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCAAGATGGCGGAGCGGCT.ACGCAATCGCCTGCAGAGCGATTC...........CaTTCCGGTTCGAATCCGGATCTTGGCT... tRNA-Cys-GCA-1-1 Sc: 52.9 GCCAAGATGGCGGAGCGGCT.ACGCAATCGCCTGCAGAGCGATTC...........CaTTCCGGTTCGAATCCGGATCTTGGCT... tRNA-Cys-GCA-1-2 Sc: 52.9 >>>>>>>..>>............<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<.... GCCAAGGTGGCAGAGCGGTT.ACGCAATCGCCAGCAGAGCGATTC...........AcTCCTGGTTCAAATCCGGACCTTGGCT... tRNA-Cys-GCA-2-1 Sc: 48.4 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCAGGATGGCAGAGTGGTG.ATGCTTCCGGCTGCAACCCGGAAT...........TaTGTGAGTTCGATTCTCACTCCTGACT... tRNA-Cys-GCA-3-1 Sc: 44.5
Glu tRNAs
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCTCCGATAGTGTAGCTcGGCcaATCATTCAGGACTCTCACTCCTGCG...........ACTGGGGTTCAAATCCCCATCGGAGCA... tRNA-Glu-CTC-1-1 Sc: 69.7 >>>>>>>..>>>.............<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCCGGTAGTGTAGTCcGGCcaATCATTCCGGCCTTTCGAGCCGAAG...........ACTCGGGTTCGAATCCCGGCCGGAGCACCA tRNA-Glu-TTC-1-1 Sc: 78.9 GCTCCGGTAGTGTAGTCcGGCcaATCATTCCGGCCTTTCGAGCCGAAG...........ACTCGGGTTCGAATCCCGGCCGGAGCACCA tRNA-Glu-TTC-1-2 Sc: 78.9
Gln tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>.>>>.......<<<.<<<<<<<<.... AGCCCGGTAGTGTAGTGGTcaA.TCATGCGGGACTCTGGATCCTGCA...........ACCTCGGTTCGAATCCGTGCCGGGCTA... tRNA-Gln-CTG-1-1 Sc: 68.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGTCCTGTAGGGTAGTGGTcaA.TCCTTCGGGCCTTTGGAGCCCGGG...........ACAGCGGTTCGAATCCGCTCAGGACTA... tRNA-Gln-TTG-1-1 Sc: 64.9
Gly tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... ACATCAGTAGTGTAGCGGTcA.TCACCGGGCGTTGCCAACGCTCGA...........ACCCGGGTTCGAATCCCGGCTGATGTA... tRNA-Gly-GCC-1-1 Sc: 59.8 ACATCAGTAGTGTAGCGGTcA.TCACCGGGCGTTGCCAACGCTCGA...........ACCCGGGTTCGAATCCCGGCTGGTGTA... tRNA-Gly-GCC-2-1 Sc: 57.0 ACATCAGTAGTGTAGCGGTcA.TCACCGGGCGTTGCCAACGCTCGA...........ACCCGGGTTCGAATCCCGGCTGGTGTA... tRNA-Gly-GCC-2-2 Sc: 57.0 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCGACTGTGGTTTAGCGGCtA.TGACCTGAGCTTCCCAAGCTTAGA...........ACCCGGGTTCGAATCCCGGCGGTCGCA... tRNA-Gly-CCC-1-1 Sc: 57.6 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCGTTGATGGTCTAGCGGCtA.TGACTTGGGCCTTCCAAGCCCAAA...........ACCCGGGTTCAAATCCCGGTCGGCGCA... tRNA-Gly-TCC-1-1 Sc: 69.7
His tRNAs
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTTAGCTtGGT.GGAGCGCACGGCTGATAACCGTGAG...........GtCCTGCGTTCGAATCGCAGCGGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 94.5 GGGCCCGTAGCTTAGCTtGGT.GGAGCGCACGGCTGATAACCGTGAG...........GtCCTGCGTTCGAATCGCAGCGGGCCCACCA tRNA-Ile-GAT-1-2 Sc: 94.5
Ile2 tRNAs
Leu tRNAs
>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAGGGTTGCCCAGCCaGGTcaA.AGGCGCTAGGTTGAGGGCCTAGTTTCGTAG....GAATtCGTGGGTTCGAATCCCAT.CCCTCGCA... tRNA-Leu-GAG-1-1 Sc: 70.3 GCGAGGGTTGCCCAGCCaGGTcaA.AGGCGCTAGGTTGAGGGCCTAGTTTCGTAG....GAATtCGTGGGTTCGAATCCCAT.CCCTCGCA... tRNA-Leu-GAG-1-2 Sc: 70.3 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAGAGTTGCCCAGCCaGGTcaA.AGGCGCCAGGTTCAGAGCCTGGTTTCGTAG....GAATtCGTGCGTTCGAATCGCAC.CTCTCGCA... tRNA-Leu-CAG-1-1 Sc: 66.3 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAGGGTTGCCCAGCTaGGTcaA.AGGCGATGGGCTTAGGACCCATTTTCGTAG....GAATtCGTGCGTTCGAATCGCAC.CCCTCGCA... tRNA-Leu-TAG-1-1 Sc: 71.7 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGAGTAACCAAGC..GGTcaA.CGGTGGCAGACTCAAGATCTGTTCGTGCAG....ACGTtCAGGGGTTCGAATCCCTT.CTCCCGCA... tRNA-Leu-CAA-1-1 Sc: 67.0 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAGGGTTGCCCAGCAcGGTcaA.AGGCGCCGGACTTAAGATCCGGTATCGAAG....GATTtCGTGGGTTCGAATCCCAC.CCCTCGCA... tRNA-Leu-TAA-1-1 Sc: 78.2 GCGAGGGTTGCCCAGCCaGGCcaA.AGGCGCCAGACTTAAGATCTGGTATCGAAG....GATTtCGTGGGTTCGAATCCCAC.TCCTCGCA... tRNA-Leu-TAA-2-1 Sc: 71.5 >>>>>.>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>.........<<<<.<.<<<<<.... GCGAGAGTTGCCCAGCCcGGTcaA.AGGCGCCGGACTTAAGATCCGGTATCGAAG....GATTtCGTGGTTTCGAATTTCAT.CCCTCGCA... tRNA-Leu-TAA-3-1 Sc: 57.0
Lys tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTTAGTCaGGCAGAGCGATGGACTCTTAATCCATAG...........GcCGGGGGTTCAAATCCCTTCGGGCCCG... tRNA-Lys-CTT-1-1 Sc: 87.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGTCaGGCAGAGCGTCTGGCTTTTAACCAGACG...........GcCTAGGGTTCAAATCCCTACGGGCCCGCCA tRNA-Lys-TTT-1-1 Sc: 91.5
Met tRNAs
iMet tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGCGGGGTGGGGTAGCCaGGAgATCCCGACGGGCTCATAACCCGTAG...........AcCGATGGTTCGAATCCATCCCCCGCTA... tRNA-iMet-CAT-1-1 Sc: 85.6 AGCGGGGTGGGGTAGCCaGGAgATCCCGACGGGCTCATAACCCGTAG...........AcCGATGGTTCGAATCCATCCCCCGCTA... tRNA-iMet-CAT-1-2 Sc: 85.6 AGCGGGGTGGGGTAGCCaGGAgATCCCGACGGGCTCATAACCCGTAG...........AcCGATGGTTCGAATCCATCCCCCGCTA... tRNA-iMet-CAT-1-3 Sc: 85.6
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCAGGTAGCTCAGTGGGA.GAGCGCTGCCCTGAAGAGGCAGTT...........GtCCCCGGTTCGAATCCGGGTCTGGGCACCA tRNA-Phe-GAA-1-1 Sc: 82.6 GCCCAGGTAGCTCAGTGGGA.GAGCGCTGCCCTGAAGAGGCAGTT...........GtCCCCGGTTCGAATCCGGGTCTGGGCACCA tRNA-Phe-GAA-1-2 Sc: 82.6
Pro tRNAs
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGGGTAGCCtGGTccATCCTGCAAGGCTGGGGGTCTTGCG...........ACCTGAGTCCAAATCTCAGCGGCCCCACCA tRNA-Pro-GGG-1-1 Sc: 71.2 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGACCGTAGGGTAGCTtGGTccATCCTTCGGCGTTCGGGACGCCGGA...........ACCTGAGTTCGAATCTCAGCGGTCCCA... tRNA-Pro-CGG-1-1 Sc: 69.4 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGGATAGTAGGGTAGCTtGGTccATCCTCGAGCGTTTGGGACGCTTGG...........ACCGCGGTTCAAATCCGCGCTATCCCA... tRNA-Pro-TGG-1-1 Sc: 62.1
Ser tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...>>>................<<<....>>>>>.......<<<<<.<<<<<<<.... GCCGAGGTAGTCTAGT..GGT..A.GGGCGCAAGCCTGGAAAGCTTGT.GGGGcc...TAG........CCCCt.CGGGAGTTCGAATCTCCC.CCTCGGCG... tRNA-Ser-GGA-1-1 Sc: 73.1 >>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...>>>..>>..........<<<<<....>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTAGTCTAGT..GGT..A.AGGCGACGGTCTCGAAAACCGTT..TCT..TCTTTG......GGAGAG..CGCAGGTTCAAATCCTGC.CCTGGGCG... tRNA-Ser-CGA-1-1 Sc: 69.5 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<....>>................<<.....>>>>>.......<<<<<.<<<<<<<.... GCTGAGGTAGCCCAGC..GGActA.CGGCGCCGGTCTTGAAAACCGGTaGCGC....TTTGc.......GCTA..CGGGAGTTCGAATCTCCC.CCTCAGCG... tRNA-Ser-TGA-1-1 Sc: 72.0 >>>>>>>..>>>>............<<<<.>>>>>.......<<<<<.............................>>>>>.......<<<<<.<<<<<<<.... GACGAGATAGCCAAGCCcGGT..A.TGGCGCGGGATTGCTAATCCCGT.GATG..CT..........CTGCGTccCGGGGGTTCGAGTCCCCC.TCTCGTCG... tRNA-Ser-GCT-1-1 Sc: 66.0
Thr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTTGGTGGCTTAGG..GGTA.TAGCGCGTCCTTGGTAAGGACGAG...........GtCGCGGGTTCAAATCCCGCCCGAGGCT... tRNA-Thr-GGT-1-1 Sc: 75.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GCCGTCGTGGCTTAGC..GGTA.TAGCGGCTGATTCGTAATCAGCAG...........GtCGAGGGTTCAAGTCCCCCCGGCGGCT... tRNA-Thr-CGT-1-1 Sc: 70.3 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCGTTGGCTCAGCCcGGTA.GAGCGAGTGACTTGTAATCACTAG...........GtCGCGTGTTCAAATCACGCACGGGGCT... tRNA-Thr-TGT-1-1 Sc: 76.8 GTCTCGTTGGCTCAGCCcGATA.GAGCTAGTGATTTGTAATCACTAG...........GtCGCGTGTTCAAATCACGCACGGGGTT... tRNA-Thr-TGT-2-1 Sc: 47.0
Trp tRNAs
>>>>>>>..>>>...........<<<.>>>>>.............................................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTGGCCTAGCCcGGCATGGCGATGGGCTCCAGcggataaatgatgaacaacgggtatactgaatctttcccgacggggcaagataatgaggaaccgttggagcactgatagatgctcaccagaaaactgtataagcagttgttcggagatACCCGTCG...........AtCGTGAGTTCGAATCTCACCAGCCCCA... tRNA-Trp-CCA-1-1 Sc: 70.2
Tyr tRNAs
Val tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGACGGTtATGACGTCGCCTTGACATGGCGGAG...........GtCCTGAGTTCGAATCTCAGCGGGCCCA... tRNA-Val-GAC-1-1 Sc: 68.0 GGGCTCGTGGTCTAGACGGTtATGACGTCGCCTTGACATGGCGGAG...........GtCCTGAGTTCGAATCTCAGCGGGCCCA... tRNA-Val-GAC-1-2 Sc: 68.0 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGACGGTtATGACGTCGCCTTCACACGGCGGAG...........GtCCTGGATTCGAATTCCAGCGGGCCCA... tRNA-Val-CAC-1-1 Sc: 67.6 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTCGTGGTCTAGTCGGTtATGACATCGCCTTTACACGGCGGGG...........AtCCTGAGTTCGAATCTCAGCGGGCCCA... tRNA-Val-TAC-1-1 Sc: 65.4