tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.6 (April 2020) scan results (on host snowball.soe.ucsc.edu)
Started: Tue Apr 21 23:03:24 PDT 2020

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Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         2
Seqs w/at least 1 hit:  1
Bases read:             4873766 (x2 for both strands)
Bases in tRNAs:         5085
tRNAs predicted:        64
Av. tRNA length:        79
Script CPU time:        0.39 s
Scan CPU time:          19.38 s
Scan speed:             503.0 Kbp/sec

First pass search(es) ended: Tue Apr 21 23:03:26 PDT 2020

Infernal Stats:
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Candidate tRNAs read:     64
Infernal-confirmed tRNAs:     63
Bases scanned by Infernal:  6365
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.57 s
Infernal CPU time:            83.51 s
Scan speed:               76.2 bp/sec

Infernal analysis of tRNAs ended: Tue Apr 21 23:04:57 PDT 2020

Overall scan speed: 93861.6 bp/sec