Methanosarcina barkeri str. Fusaro
tRNA Gene Summary
Overview
| tRNAs decoding standard 20 AA | 62 |
| Selenocysteine tRNAs (TCA) | 0 |
| Possible suppressor tRNAs (CTA,TTA,TCA) | 0 |
| tRNAs with undetermined or unknown isotypes | 1 |
| Predicted pseudogenes | 0 |
| Total tRNAs | 63 |
Intron Summary (tRNAs with introns: 4)
| Arg TCG 1 | Met CAT 1 | Tyr GTA 1 | Trp CCA 1 |
Four Box tRNA Sets
| Isotype | tRNA Count by Anticodon | Total | |||
|---|---|---|---|---|---|
| Ala | AGC | GGC 1 | CGC 1 | TGC 1 | 3 |
| Gly | ACC | GCC 3 | CCC 1 | TCC 1 | 5 |
| Pro | AGG | GGG 1 | CGG 1 | TGG 1 | 3 |
| Thr | AGT | GGT 1 | CGT 1 | TGT 2 | 4 |
| Val | AAC | GAC 2 | CAC 1 | TAC 1 | 4 |
Six Box tRNA Sets
| Isotype | tRNA Count by Anticodon | Total | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Ser | AGA | GGA 1 | CGA 1 | TGA 1 | ACT | GCT 1 | | | 4 |
| Arg | ACG | GCG 1 | CCG 1 | TCG 1 | | | CCT 1 | TCT 1 | 5 |
| Leu | AAG | GAG 2 | CAG 1 | TAG 1 | | | CAA 1 | TAA 3 | 8 |
Two Box tRNA Sets
| Isotype | tRNA Count by Anticodon | Total | |||
|---|---|---|---|---|---|
| Phe | AAA | GAA 2 | | | 2 |
| Asn | ATT | GTT 2 | | | 2 |
| Lys | | | CTT 1 | TTT 1 | 2 |
| Asp | ATC | GTC 1 | | | 1 |
| Glu | | | CTC 1 | TTC 2 | 3 |
| His | ATG | GTG 1 | | | 1 |
| Gln | | | CTG 1 | TTG 1 | 2 |
Two Box and Other tRNA Sets
| Isotype | tRNA Count by Anticodon | Total | |||
|---|---|---|---|---|---|
| Ile | AAT | GAT 2 | CAT 1 | TAT | 3 |
| iMet/Met | | | CAT 3/1 | | 4 |
| Tyr | ATA | GTA 1 | | | 1 |
| Supres | | TCA | CTA | TTA | 0 |
| Cys | ACA | GCA 4 | | | 4 |
| Trp | | | CCA 1 | | 1 |
| SelCys | | | | TCA | 0 |
The Lowe Lab, Biomolecular Engineering, University of California Santa Cruz