Arabidopsis thaliana (TAIR10 Feb 2011)

tRNA Gene Summary

Overview
High confidence set 580
tRNAs decoding standard 20 AA 580
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 3
Unexpected anticodons 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 8
Secondary filter (low feature scores, possible rep. element) 39
Tertiary filter (excessive isotype copies, possible rep. element) 11
Modification Data  
Genes making transcripts with annotated modifications 158
Types of modifications 30
Total annotated modifications 2012

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 82)
Arg TCT
1		Met CAT
11		Tyr GTA
70
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
16		GGC
 		CGC
7		TGC
10		33
GlyACC
 		GCC
23		CCC
5		TCC
13		41
ProAGG
17		GGG
 		CGG
5		TGG
45		67
ThrAGT
10		GGT
 		CGT
5		TGT
8		23
ValAAC
15		GAC
 		CAC
8		TAC
7		30
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
37		GGA
1		CGA
4		TGA
9		ACT
 		GCT
13		 
 		 
 		64
ArgACG
9		GCG
 		CCG
5		TCG
6		 
 		 
 		CCT
8		TCT
10		38
LeuAAG
12		GAG
1		CAG
3		TAG
10		 
 		 
 		CAA
10		TAA
6		42
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 		GAA
16		 
 		 
 		16
AsnATT
 		GTT
16		 
 		 
 		16
Lys 
 		 
 		CTT
18		TTT
15		33
AspATC
 		GTC
27		 
 		 
 		27
Glu 
 		 
 		CTC
14		TTC
14		28
HisATG
 		GTG
10		 
 		 
 		10
Gln 
 		 
 		CTG
9		TTG
8		17
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
17		GAT
 		CAT
 		TAT
5		22
iMet/Met 
 		 
 		CAT
10/15		 
 		25
TyrATA
 		GTA
76		 
 		 
 		76
Supres 
 		TCA
 		CTA
 		TTA
1		1
CysACA
 		GCA
16		 
 		 
 		16
Trp 
 		 
 		CCA
14		 
 		14
SelCys 
 		 
 		 
 		TCA
 		0