tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Wed Jan 10 17:20:57 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         7
Seqs w/at least 1 hit:  7
Bases read:             119667750 (x2 for both strands)
Bases in tRNAs:         55084
tRNAs predicted:        726
Av. tRNA length:        75
Script CPU time:        14.44 s
Scan CPU time:          533.28 s
Scan speed:             448.8 Kbp/sec

First pass search(es) ended: Wed Jan 10 17:21:35 PST 2018

Infernal Stats:
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Candidate tRNAs read:     726
Infernal-confirmed tRNAs:     698
Bases scanned by Infernal:  69598
% seq scanned by Infernal:  0.0 %
Script CPU time:          4.48 s
Infernal CPU time:            441.26 s
Scan speed:               157.7 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 10 17:32:51 PST 2018

Overall scan speed: 240911.1 bp/sec