GtRNAdb: Arabidopsis thaliana (TAIR10 Feb 2011) Summary

tRNA Gene Summary

Overview

High confidence set	580
tRNAs decoding standard 20 AA	580
Selenocysteine tRNAs (TCA)	0
Notable atypical predictions
Anticodon/isotype mismatch	3
Unexpected anticodons	1

Other tRNA-like predictions
Primary filter (tRNAscan-SE pseudogenes)	8
Secondary filter (low feature scores, possible rep. element)	39
Tertiary filter (excessive isotype copies, possible rep. element)	11

Modification Data
Genes making transcripts with annotated modifications	158
Types of modifications	30
Total annotated modifications	2012

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 72)

Met CAT
11

Tyr GTA
61

Four Box tRNA Sets

Isotype	tRNA Count by Anticodon				Total
Ala	AGC 16	GGC	CGC 7	TGC 10	33
Gly	ACC	GCC 21	CCC 5	TCC 12	38
Pro	AGG 15	GGG	CGG 5	TGG 43	63
Thr	AGT 10	GGT	CGT 5	TGT 8	23
Val	AAC 14	GAC	CAC 8	TAC 7	29

Six Box tRNA Sets

Isotype	tRNA Count by Anticodon								Total
Ser	AGA 35	GGA	CGA 4	TGA 7	ACT	GCT 11			57
Arg	ACG 9	GCG	CCG 4	TCG 6			CCT 7	TCT 9	35
Leu	AAG 11	GAG	CAG 3	TAG 9			CAA 10	TAA 6	39

Two Box tRNA Sets

Isotype	tRNA Count by Anticodon				Total
Phe	AAA	GAA 15			15
Asn	ATT	GTT 15			15
Lys			CTT 17	TTT 13	30
Asp	ATC	GTC 25			25
Glu			CTC 13	TTC 10	23
His	ATG	GTG 9			9
Gln			CTG 9	TTG 7	16

Two Box and Other tRNA Sets

Isotype	tRNA Count by Anticodon				Total
Ile	AAT 17	GAT	CAT	TAT 5	22
iMet/Met			CAT 9/11		20
Tyr	ATA	GTA 61			61
Supres		TCA	CTA	TTA	0
Cys	ACA	GCA 14			14
Trp			CCA 13		13
SelCys				TCA	0