Haloferax volcanii DS2

tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 52
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 53
Modification Data  
Genes making transcripts with annotated modifications 46
Types of modifications 14
Total annotated modifications 362
Intron Summary (tRNAs with introns: 3)
Gln TTG
1		Met CAT
1		Trp CCA
1

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 4018
Number of Codons: 1142541

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 		GGC
1		CGC
1		TGC
2		4
GCT
0.47		GCC
4.76		GCG
5.14		GCA
0.64		11.01%
GlyACC
 		GCC
2		CCC
1		TCC
1		4
GGT
0.91		GGC
5.21		GGG
1.63		GGA
0.74		8.49%
ProAGG
 		GGG
1		CGG
1		TGG
1		3
CCT
0.12		CCC
1.77		CCG
2.44		CCA
0.24		4.57%
ThrAGT
 		GGT
1		CGT
1		TGT
1		3
ACT
0.28		ACC
2.71		ACG
2.9		ACA
0.29		6.18%
ValAAC
 		GAC
2		CAC
1		TAC
1		4
GTT
0.53		GTC
6.37		GTG
2.13		GTA
0.22		9.25%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 		GGA
1		CGA
1		TGA
1		ACT
 		GCT
1		 
 		 
 		4
TCT
0.2		TCC
1.24		TCG
2.49		TCA
0.22		AGT
0.32		AGC
1.3		 
 		 
 		5.77%
ArgACG
 		GCG
1		CCG
1		TCG
1		 
 		 
 		CCT
1		TCT
1		5
CGT
0.37		CGC
3.33		CGG
1.75		CGA
0.89		 
 		 
 		AGG
0.12		AGA
0.18		6.64%
LeuAAG
 		GAG
1		CAG
1		TAG
1		 
 		 
 		CAA
1		TAA
1		5
CTT
0.45		CTC
5.86		CTG
2.04		CTA
0.14		 
 		 
 		TTG
0.42		TTA
0.12		9.03%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 		GAA
2		 
 		 
 		2
TTT
0.31		TTC
3.17		 
 		 
 		3.48%
AsnATT
 		GTT
1		 
 		 
 		1
AAT
0.21		AAC
2.17		 
 		 
 		2.38%
Lys 
 		 
 		CTT
1		TTT
1		2
 
 		 
 		AAG
1.42		AAA
0.58		2%
AspATC
 		GTC
2		 
 		 
 		2
GAT
0.64		GAC
7.78		 
 		 
 		8.42%
Glu 
 		 
 		CTC
1		TTC
1		2
 
 		 
 		GAG
5.38		GAA
2.59		7.97%
HisATG
 		GTG
1		 
 		 
 		1
CAT
0.16		CAC
1.81		 
 		 
 		1.97%
Gln 
 		 
 		CTG
1		TTG
1		2
 
 		 
 		CAG
1.91		CAA
0.48		2.39%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 		GAT
1		CAT
1		TAT
 		2
ATT
0.62		ATC
3.0		 
 		ATA
0.21		3.83%
iMet/Met 
 		 
 		CAT
1/1		 
 		2
 
 		 
 		ATG
1.72		 
 		1.72%
TyrATA
 		GTA
2		 
 		 
 		2
TAT
0.2		TAC
2.42		 
 		 
 		2.62%
Supres 
 		TCA
 		CTA
 		TTA
 		0
Stop 
 		TGA
0.21		TAG
0.06		TAA
0.08		None
CysACA
 		GCA
1		 
 		 
 		1
TGT
0.2		TGC
0.43		 
 		 
 		0.63%
Trp 
 		 
 		CCA
1		 
 		1
 
 		 
 		TGG
1.12		 
 		1.12%
SelCys 
 		 
 		 
 		TCA
 		0
 
 		 
 		 
 		 
 		-