Alignment of Pyrococcus homolog sRNA groups

60 Homolog groups: 50 with 3 members, 8 with 2 members, and 2 singletons.

(Last updated 11/29/00)

Name C Box D' Box C' Box D Box

Pho sR1 AAAGAAGGCG ATGATGA AGCCTTCCGCAC CTGA ATGA TGAGGA GTGGACGGCTTC CTGA GCCT-ACTCCT

Pfu sR1 AGGTAAGGCG ATGATGA TGCCTTCCGCAC CTGA TTGG TGAGGA GTGGACGGCTTC CTGA GCCT-ACTCCT

Pab sR1 ATAAATGGCA ATGATGA AGCCTTCCGCAC CTGA ACGG TGAGGA GTGGACGGCTTC CTGA GCCTCACTCC

Pho sR2 AAAAAGAGGG ATGATGA GTTTTTCCCTCACT CTGA GGAG TGATGA GGAGCCGATGCA CTGA CCTCGATCAT

Pfu sR2 GAAATGGGGG ATGATGA GTTTTTCCCTCACT CTGA TTAG TGATGA GGAGCCGATGCA CTGA CCTCGAGCAT

Pab sR2 GAGAAAAGGG ATGATGA GTTTTTCCCTCACT CTGA GCCG TGATGA GGAGCCGATGCT CTGA CCTCTGCCAT

Pho sR3 AATTGTGGCG ATGATGA ATAGCAAGCCAG CTGA AGAG TGATGA AGTGAACACCCC CTGA GCCTACCTAA

Pfu sR3 ACCTCCGGCG ATGATGA ATAGCAAGCCAC CTGA AGAG TGATGA GGTGAACACCCC CTGA GCCTATTCCA

Pab sR3 TATGAAGGCG ATGATGA GTAGCAAGCCAC CTGA CCTA TGATGA GGTGAACACCCC CTGA GCCAATTTCA

Pho sR4 CCGAGTTGGG ATGATGA GGGAGATTTCGG CCGA GTGG TGAGGA GACTCGCATGGG CTGA CCTTTCTAAG

Pfu sR4 AGCATAAGGG ATGATGA AGGAGATTTCGG CAGA GGTG TGAAGA GACTCGCATGGG CTGA CCACCACCTT

Pab sR4 GAAGGATGGG ATGATGA AGGAGATTTCGG CCGA AAGG TGAGGA AACTCGCATGGG CTGA CCTTTCTCAG

Pho sR5 ATAAGGTGTG ATGATGA ACGCCAT-CGATA CTGA GATA TGATGA CCGGATTCCTGG CTGA TTTCTTTTAT

Pfu sR5 CTTATTTTGA ATGATGA GCGCCATCCGATA CTGA GGGCA TGATGA CCGGATTCCTGG CTGA TCTCATTTTC

Pab sR5 AAGACAATAG ATGATGA GCGCCAT-CGATG CTGA GGAG TGATGA CCGGATTCCTGG CTGA TCTTTATTCT

Pho sR6 TGGAAAT-GGG ATGATGA AGTTTGCTACCC CTGA AGAA TGATGA ACCCTGCCGTTA CTGA CCATTTAGCT

Pfu sR6 AAAAATAGGG ATGATGA GATTTGCTACCT CTGA AAATAA TGATGA ACCCTGCCGTTA CTGA CCGTTTAACT

Pab sR6 CCAATGAGGA ATGATGA GATTTGCTACCA CTGA GCAG TGATGA GCCCTGCCGTTA CTGA CCTTTTACTA

Pho sR7 GTAATCCGGG ATGATGA ACCTCCATCCCAA- CTGA ATAAA TGATGA ATGCACATCAGG CTGA CATTACCTTT

Pfu sR7 GAGATTTTCG ATGATGA GCCTCCATCCCATG CTGA AGGG TGATGA GTGCACATCAGG CTGA GCTTTATAAC

Pab sR7 ATTATAAGGG ATGATGA GCCTCCAT-CCAAG CTGA GCAAG TGATGA GTGCACATCAGG CTGA ACCTTTTTAT

Pho sR8 CGAATAGGCG ATGATGA GCTCCATCCCTAC CTGA GTTG TGATGA ATGTAGCGCGCT CTGA GCAACCCTTA

Pfu sR8 TCAATGAGCA ATGATGA GCTCTATCCCTAT CTGA CCCA TGATGA CTGTAGCGCGCG CTGA GCTACTCCTT

Pab sR8 TTGAAAGGCG ATGATGA GCTCCATCCCTAT CTGA GTTG TGATGA CTGTAGCGCGCT CTGA GCTACAGGCT

Pho sR9 CCGACAGGGG ATGAAGA GCTTTTGCTTTG CTGA GCAGA TGATGA CCACGCCCTTCG CTGA CCTGCTATTT

Pfu sR9 CCACAATGGG ATGATGA CCTTTTGCTTTA CTGA ACACA TGATGA CCACGCCCTTCG CTGA CCTAAATATT

Pab sR9 GCCTACAGTT ATGATGA ACTTTTGCTTTG CTGA TGTGG TGATGA GCACGCCCTTCG CTGA TACTCTCTCG

Pho sR10 TTAGCGACTA ATGATGA ACTACTCCCGG CTGA GGGG TGATGA ACCACCTACCGG CTGA GGTGAAAGCA

Pfu sR10 ATTATGGCAG ATGATGA GCTACTCCCGG CTGA AAGA TGATGA ACCACCTACCGG CTGA GGTTATGGAA

Pab sR10 AACGGTAGCG ATGATGA ACTACTCCCGG CTGA GCTG TGATGA ACCACCTACCGG CTGA GGTGGAAACA

Pho sR11 CTCTAGCGGG ATGATGA CTTTGCCGAGTG CTGA GCTGG TGATGA GTAAACAGTCGT CTGA CTTTCCCTTT

Pfu sR11 GCAGGAGGGG ATGATGA GTTTGCCGAGTG CTGA GCTAG TGATGA ATAAACAGTCGC CTGA CTTCCCCTCT

Pab sR11 CTTTAATGGG ATGATGA CTTTGCCGAGTG CTGA GGAAG TGATGA GTAAACAGTCGC CTGA CCCCCTGCTT

Pho sR12 ATCGGCTTGG ATGATGA GCGTTTACCGGT CTGA GCTG TGATGA TATCGGCACTGT CTGA CTAGTAATCT

Pfu sR12 AAGAAAGGGG ATGATGA GCGTTTACCGGT CTGA GTTG TGATGA TACTGGCACTGT CTGA CCTTAGTAGT

Pab sR12 ATCGGCTGGG ATGATGA GCGTTTACCGGT CTGA GCTG TGATGA CATCGGCACTGT CTGA CTAGTAGTCA

Pho sR13 TCATTGTTGG GTGATGA GATGGCGGATTG CTGA GAG-A TGATGA GGACCTTAGGGG CTGA TTAAATTTCG

Pfu sR13 TCCTACTGGT GTGATGA AAAGGCGGATTG CTGA GAGGA TGATGA AGACCTTAGGGG CTGA TCACACCTCA

Pab sR13 TATTACTTGA ATGATGA GATGGCGGATTG CTGA GCTG- TGATGA AGACCTTAGGGT CTGA CTTCCCAAAA

Pho sR14 CTATTAACCA ATGATGA CGGATCAACCGG CTGA TCGAA TGATGA CGTCCGCATCAC CTGA GGGTTTCAAG

Pfu sR14 CTATCACCCA ATGATGA TGGATCAACCGG CTGA AGTA TGATGA GGTCCGCATCAC CTGA GGGGATGGAT

Pab sR14 AGACGATCCG ATGATGA TGGATCAACCGG CTGA GTGG TGATGA AGTCCGCATCAC CTGA GGCTCTCAAG

Pho sR15 AGATGAAGAG ATGATGA GTAAACCCGTTG CTGA GCGG TGATGA GAGGATCGACTAG CTGA ACAACATCTT

Pfu sR15 TATGCATGAG ATGATGA ATAAACCCGTTG CTGA AAAA TGATGA GAGGATCGACTAG CTGA CTACAGCTCA

Pab sR15 ATGTGTAGTG ATGATGA TTAAACCCGTTG CTGA GAGG TGATGA GGGGACCGACTAG CTGA ACAACACTTA

Pho sR16 ATCAAGTCTG ATGATGA ACCTTCCCCTCAC CTGA AAGG TGATGA GCACACCGGTAGG CTGA GGGTGATAAT

Pfu sR16 TGTATATCTG ATGATGA TCCTTCCCCTCAA CTGA GAGG TGATGA GCACACCGGTAGG CTGA GG-TGATAGTA

Pab sR16 GTTTCCATAG ATGATGA GCCTTCCCCTCAC CTGA GTGG TGATGA GCACACCGGTAGG CTGA GGGTGATATT

Pho sR17 ACGGTCTGCG ATGATGA GAGCGAACTGCA CTGA AAAG TGATGA CAGGGCCTTG CTGA GCGGTGATCG

Pfu sR17 AAGATGCGCG ATGAAGA AAGCGAACTGCT CTGA GAGA TGATGA AAAGGGCCTAA CAGA GCGTGAGAGG

Pab sR17 ACGGTTTGCG ATGATGA AAGCGAACTGCA CTGA AAAG TGATGA GAGGGCCTCG CTGA GCGGTGATGT

Pho sR18 TTTATTTTTA ATGATGA AACAGCCAGGACC CTGA TGGGA TGATGA GTGGTGGGCTTAG CTGA TGTTGCGGTA

Pfu sR18 TTAATTTTTG ATGATGA AACAGCCAGGACC CTGA TGAGA TGATGA ATGGTGGGCTTAG CTGA CGTAGCTGTT

Pab sR18 TCTATTTTTG ATGATGA TACAGCCAGGACC CTGA TGGGA TGATGA GTGGTGGGCTTAG CTGA TGTTGCCGTT

Pho sR19 TGGCGGGCTC GTGATGA GCTTTCCCTACGGC CCGA GC-TTAGGCGA TGAGGA ATACAGCCAGGG CTGA TTTTGGTGAT

Pfu sR19 TGGCGGGCTT ATGATGA ACTTTCCCTACGGC CTGA GCGTCACGCGA TGAGGA ATACAGCCAGGG CTGA TGAAGGTGAT

Pab sR19 TGGCGGGCAT ATGATGA GCTTTCCCTACGGC CCGA GC-TCACGCGA TGAGGA ATACAGCCAGGG CTGA TTTCGGTGAT

Pho sR20 ATGAATGGCG ATGATGA GGCCTCGATTGG CTGA AT-- CGATGA TTGAGAGGGACTTGG CTGA GCGGTGATTA

Pfu sR20 TAGAGGAGCA ATGATGA AGCCTCGATTGG CTGA TT-- TGATGA TTGGGAGGGACTTGG CTGA GCGGTGATTA

Pab sR20 GAGGACCGCG ATGATGA AGCCTCGATTGG CTGA ATCG CGATGA TTGGGAGGGACTTGG CCGA GCGGTGGTTA

Pho sR21 TACCATGCCG ATGATGA GACCGGTACTGG CCGA AGTA TGATGA GCACTCGGTTAG CTGA GGCCTGAAAA

Pfu sR21 TTGTCTGTCG ATGACGA AACCGGCACTAT CTGA ATGA TGATGA GCACTCGGTTGT CTGA GACTACTAAA

Pab sR21 TAGCTTGCCA ATGATGA GACCGGCACTAA CTGA GTTG TGATGA GCACTCGGTTGG CTGA GACTGAAAAC

Pho sR22 GGAACATCCG ATGATGG GAACAGGGTAGCTG CCGA GT TGATGA GGAAGCCGTTCCAGA CTGA GGAAAGAAAA

Pfu sR22 TAATTGCCCG ATGATGG GAACAGGGTAGCTG CCGA GC TGATGA GGAAGCCGTTCCAGA CTGA GGGAAAAGTT

Pab sR22 GAAATGCCCG ATGATGC CAACAGGGTAGCTG CCGA GG CGATGA GGAAGCCGTTCCAGA CTGA GGGCGTAGCA

Pho sR23 TCCTATTAAG ATGATGA ATCTGGAGCCCC CTGA TCGG TGATGA TCAGTCTGCGGAG CTGA TAACATGATT

Pfu sR23 GTAAAGTTGA ATGATGA ATCTGGAGCCCA CTGA TTTAA TGATGA CCTGTTCGCGGGG CTGA TGCTGTGATA

Pab sR23 ATACTAAAAG ATGATGA ATCTGGAGCCCC CTGA GTGA TGATGA GCAGTCTGCGGAG CTGA TATCATGATT

Pho sR24 AAGTTACCCT ATGATGA GAGAGCTGTTAA ATGA G CGGTGA TTAAAGGATGGCTGG CTGA GGGTGAGATA

Pfu sR24 AAATTTCCCT ATGATGA GAGAGCTGTTAA ATGA G TGGTGA TTAGAGGATGGCTGG CTGA GGGTGAGAGA

Pab sR24 AAGTGGCCCT ATGATGA GAGAGCTGTTAA ATGA T TGATGA TTAGAGGATGGCTGG CTGA GGGGATAATC

Pho sR25 TGAAGGTTCA ATGATGA AAACTCCCTGAT CTGA AAAATAAA TGATGA AGACCGGTTCA CTGA GATTTCTGCT

Pfu sR25 CAACGATGAG ATGATGA GAACTCCCTGAT CTGA GCGG TGATGA GGACCGGTGAT CTGA AAAATAGTAA

Pab sR25 TGGGCCTGCG ATGATGA TAACTCCCTGAC CTGA AAGG TGATGA GGACCGGTTCA CTGA GCTTTGGATT

Pho sR26 TAAAAAGGCG ATGATGA GTGATGGGCGAA CTGA AAACA TGATGA AGGTAGGTGATCT CTGA GCTATCATCG

Pfu sR26 AAAAGAGGCA ATGATGA GTGATGGGCGAA CTGA AATAG TGATGA CGGTAGGTGATCT CTGA GCCAACTTAC

Pab sR26 GGGCTTGGCG ATGATGA GTGATGGGCGAA CTGA GAAG TGATGA TGGTAGGTGATCT CTGA GCCAATCCGG

Pho sR27 TAGCTTCAGA GTGATGA GCCCGCGCAGCG CTGA TAGA TGATGA AGATTTTAAGTG CTGA CTTCTAACCT

Pfu sR27 TGTGGTAAAG ATGATGA ACCCGCGCAGCT CTGA AGGGA TGATGA GGATCTTAAGTG CTGA TCTCTACCAA

Pab sR27 CTTGCCTCGA GTGATGA GCCCGCGCAGCG CTGA GCAAGA TGATGA AGATTTTAAGTG CTGA CGCCCAATAA

Pho sR28 ATACTTAGGA ATGATGA CCGGTTTCGGGA CTGA ACGA TGATGA CACCAGCTATCG CTGA CCTTGTCTAA

Pfu sR28 AAGCGCAGAG ATGATGA CCGGTTTCGGAT CCGA TGGA TGAGGA CATCAGCTATCG CTGA TCTCTCATTC

Pab sR28 TAAACCTTGG ATGATGA CCGGTTTCGGGA CTGA GCTA TGATGA CACCAGCTATCG CTGA CTCCTCTTAC

Pho sR29 TTGTGGGCGG ATGATGA TCCTTGCCCAGC CTGA GGAG TGATGA AGTCGGTATTAG CTGA CGCTGTGTTT

Pfu sR29 GGATTAGCGG ATGATGT GCCTTGCCCAGC CTGA AAGG TGATGA TGTCGGTATTAG CTGA CGCTTTTCCG

Pab sR29 GCTATGGCGG ATGACGA GCCTTGCCCAGC CTGA AAGG TGATGA TGTCGGTATTAG CTGA CGCCCAGGAG

Pho sR30 ATTATTGTGG ATGATGA GTAGTCGGAAGG CTGA GCTGA TGATGA AGGACGCCCATGT CTGA TCCTTATCTT

Pfu sR30 ATTATTGTGG ATGATGA GTAGTCAGAAGG CTGA GTTGA TGATGA AGGACGCCCACGC CTGA CTCTTTTCTA

Pab sR30 ATAATCGTGG ATGATGA TTAGTCGGAAGG CTGA AGTG- TGATGA AGGACGCCCATGG CTGA ACAAAGCATA

Pho sR31 GGGATTAAAG ATGATGA ACTCGGCAGGTC CTGA TTCG TGATGA GGATCTTGAGTG CTGA TTTACCTTAC

Pfu sR31 TTGGGTTGAG ATGATGA ACTCGGCAGGTC CTGA AGGA TGATGA GGATCTTGAGTG CTGA TCACCTAACT

Pab sR31 GAAGATGAAG ATGATGA GCTCGGCAGGTC CTGA GGAG TGATGA GGATCTTGAGTG CTGA TTCACCTTAC

Pho sR32 TAAAATGGAG ATGATGA GCTTGGCCGCTAC CCGA G TGATGA GGGCC-AAACTCCGGTG CTGA TCACATTGCA

Pfu sR32 AAGGAGTGAG ATGATGA GCTTGGCCGCTTC CCGA G TGGTGA GGGTCTAAACTCCGGTG CTGA TGAAGTCAAA

Pab sR32 AATCCGAGAA ATGATGA GCTTGGCCGCTAC CCGA T CGATGA GGGT-TAAACTCCGGTG CTGA TCATAGGATG

Pho sR33 CCTCTTTGAC GTGATGA GGAATCGGGGAG CTGA AGCTA TGATGA GATCCGCCAACG CTGA TTTTCCAAAT

Pho sR34 ATCCAAGCCG ATGAGGA TCGTTAGCCACG CTGA GGA TGATGA TAAGAGGGTTAG CCGA GGCTTATTTT

Pfu sR34 TATATGACCG ATGAGGA GCGTTAGCCACG CTGA AGA TGATGA CAAGAGGGTTAG CCGA GGTCTTCTCT

Pab sR34 ATCCCAGCCG ATGAGGA CCGTTAGCCACG CTGA GGA TGATGA TAAGAGGGTTAG CCGA GGCTTATTTT

Pho sR35 AGACGAAAAA ATGATGA GTACGGGGCCAC CTGA GCGG TGATGA GGTTTCTCCCAAGT CTGA TTACCTAACC

Pab sR35 ACAAAATAAA ATGATGA GTACGGGGCCAC CTGA ATGG TGATGA GGTTTCTCCCAAGG CTGA TTACCTTACC

Pho sR36 GGTTTGGTGG ATGAAGA GAGGGTAGGTAG CTGA TCTG TGATGA ACTAATCGGCCC CTGA CACGGGGTGA

Pfu sR36 GAATAGGTGG ATGAAGA AAGGGTAGGTAG CTGA GCGG TGATGA TCTAATCGGCCC CTGA CACCGCATAA

Pab sR36 GAATTGGTGG ATGAGGA GAGGGTAGGTAG CTGA GTTA TGATGA ACTAATCGGCCC CCGA CACCTATTGG

Pho sR37 GGTTAGAGCG ATGATGT AGATTAGCCCCGA CTGA GCGG TGATGA GGCTGGCCCATCG CTGA GTCCCAAAAA

Pfu sR37 AAGCTAGGCG ATGATGT AGATTAGCCCCGA CTGA GCGG TGATGA AGCTGGCCCATCG CTGA GTCTTTAAGA

Pab sR37 AAGCAAAGCG ATGATGT AGATTAGCCCCGA CTGA GTTG TGATGA GGCTGGCCCATCG CTGA GCTAGATGCT

Pho sR38 GGAGTAGGCG ATGATTT GACTCCGGAAAAG CTGA ATGA TGATGA AGTCCAGCCCGA ATGA GCCGGGGTGA

Pfu sR38 TAGGGAGGCG ATGATTT GACTCCGGAAAAT CTGA TCGA TGATGA AGTCCAGCCCGA ATGA GCCGAGGTGA

Pab sR38 AAAATAGGCG ATGATTT GACTCCGGAAAAG CTGA GCGA TGATGA AGTCCAGCCCGA ATGA GCCGAGGTGA

Pho sR39 AAAGGGGGTG ATGAGGA AAATTTCGCTAG CTGA AGTGAAAGA TGATGA ATACCCTCGCAA CCGA GCCTATTTTA

Pfu sR39 AAAATGGGCG ATGAAGA TAATTTCGCTAG CCGA AAAATA AGATGA GGAGTACCCTCGCAA CTGA GCCTTACTTA

Pab sR39 TAAGTAGGCG ATGAAGA AAATTTCGCTAG CTGA AAAG- TGATGA GTACCCTCGCAA CTGA GCCTATTTGA

Pho sR40 TCCAGAGGCC ATGAGGA TAGGCGGGTTTG CTGA CCTCGGGGCG TGATGA ACCTTTGGAGCC CCGA GGGCCGGAGA

Pfu sR40 TCCAGAGGCC ATGAGGA TAGGCGGGTTTG CTGA CCTCGGGGCG TGATGA ACCTTTGGAGCC CCGA GGGCCGGAGA

Pab sR40 TCCAGAGGCC ATGAGGA CAGGCGGGTTTG CTGA CCTCGGGGCG TGATGA ACCTTTGGAGCC CCGA GGGCCGGAGA

Pho sR41 TTGAAGGCGG ATGATGA AGGCTAATTT CGGA TTGG TGAAGA GCCCTATGAGCG CTGA CGCTATGATT

Pfu sR41 GCACCGACGG ATGATGA AATGTAAAGA CGGA AAGA TGAAGA GCCCTATGAGCG CTGA CGCCCTTTCT

Pab sR41 ACCTTGGCGG ATGATGA GCTAGTAA-TT CTGA GCGA TGAAGA GCCCTATGAGCG CTGA CGCCTTGGAA

Pho sR42 CTACTTTGTG ATGATGA TCTTCACGGTACC CTGA GAGGCGCTCGA TGATGA GCCCCCTCTCAA CTGA TCATAGCTTT

Pfu sR42 TTATAGCTTG ATGATGA ACTTCACGGTACC CTGA GTTCTAAAAACGA TGATGA GCCCCCTCTCGT CTGA TTACCTTTTT

Pab sR42 ATAAGCTATG GTGATGA TCTTCACGGTACC CTGA GAGACCCTCGA TGATGA GCCCCCTCTCAA CTGA CCTAAATTCT

Pho sR43 AGTAATTGAG ATGAAGA AAAAGCACCTCCA CTGA GTGA TGATGA CACGCCCACGGT CTGA TCAAACTGTT

Pfu sR43 TTGAGGGACG ATGAAGA GAAAGCACCTCCA CGGA TAGA TGAAGA AACGCCCACGGA CTGA GTCTTCACTC

Pab sR43 AAGTAGGGAG ATGAAGA GAAAGCACCTCCA CTGA TTGA TGATGA AACGCCCACGGT CGGA TTTCCTTTCC

Pho sR44 CGTCAAGGCG ATGAGGA GATCGGTCTTGT CTGA AGAA TGATGA AAGTGGTCACCG CTGA GCCTTAAGAA

Pfu sR44 AAATTTGGCT ATGAGGA AATCGGTCTTAG CTGA GCTTA TGATGA AAGTGGTCACCG CCGA GCCAAGTATA

Pab sR44 CAAGAAGGCA ATGATGA AATCGGTCTTGT CCGA GGAG TGATGA TAGTGGTCACCG CTGA GCCACCAACT

Pho sR45 AAAAAACGGG ATGAGGA AGCCGAGGACAC CTGA AGGA TGATGA CTCTTCGCTTCG CCGA CCGGCGGTGA

Pfu sR45 AAAAGGCGGG ATGAGGA AGCCGAGGACAC CTGA TGGA TGATGA CTCTTCGCTTCG CCGA CCGGTGGTGA

Pab sR45 AAAAAACGGG ATGAGGA AGCCGAGGACAC CTGA ATTG TGATGA ATCTTCGCTTCG CCGA CCGAGGTGAT

Pho sR46 TCAAAAGGCA ATGAGGA ATGAATCCAATG CTGA GCTTAGG CAATGA TTGGCCCCAGAGTGG CCGA GCCTTCATAT

Pfu sR46 CACTTAGGCG ATGACGA CTGAATCCAATG CTGA GCAAAGG CGATGA TTGGCCCCAGAGTGG CTGA GCCCTAATTT

Pab sR46 CTCAAGGGCA ATGAGGA ATGAATCCAATG CTGA GCAAAGG CAATGA TTGACCCCAGAGTGG CCGA GCCTCTATAT

Pho sR47 AGTTCAACCG ATGAAGA GCCTTTTGGGCC CTGA GAGA TGATGA AAGCCCCCCTAT CTGA GGGGGATAAA

Pab sR47 GAGTATTGGG ATGATGA AACTCCTTTCGGGCA CTGA TCCG TGATGA AGGCCCTCCTAT CTGA GCATCCCAAC

Pfu sR48 CTTTCTCTTC TTGATGT GGAACCCACCCTTGG CTGA ATGA TGATGA GGCCTCGTGGGTT CCGA AGTTTTTATA

Pab sR48 ATTTTTCTCG AGGATGA TCCCACCCTTGG CTGA AGTG TGATGA TGTCTCGT-GGTT CTGA GAGAAGTTAG

Pho sR49 TTCCTGGGCG ATGAAGA ACTGGATCCGAG CTGA TCTCA TGATGA AGGAGGTTTAAC CTGA GCCTCCATGA

Pab sR49 TTCCTGGGCG ATGAAGA ACTGGATCCGAG CTGA GCTTA TGATGA TGGAGGTTTAAC CTGA GCCTTCATAA

Pfu sR50 CCTATTGTAG ATGATGA GGCCATCCCCT CTGA TCTG TGATGA GTGGGTGAGCTGG CTGA TACTTTATTC

Pab sR50 ATAAGGAGGG ATGATGA GGCCTACCTCG CTGA GCTG TGATGA GTGGGTGAGCTGG CTGA CATTTCATTA

Pfu sR51 TATAGCTCCG ATGATGA GTCTCGCTCGG CTGA ATGA TGATGT AGGGCATACTGG CTGA GGTGATAGTA

Pab sR51 AACCTTGTTG ATGATGA ACTCGCTTGTTG CTGA AGGG TGATGA AGGGCATACTGG CTGA TTTGGAGGTT

Pfu sR52 TAAGGAGAAG AGGATGA AAAAGAAGAAAAGG CTGA ATAGA TGATGA GAGGGGACCTCT CTGA TGAAAGTTGG

Pab sR52 AGGTAGGGGG AGGATGA AGAAAAAGTTCAAAGG CTGA AAGG TGATGA GAGGGGACCTCG CTGA TGTTGATCGG

Pho sR53 AGTCCGGCCG ATGACGA AGGTGGGCACTCT CCGA TT TGATGA GGATGTGGGGCGAGGAGC CAGA GGCTTTATAA

Pfu sR53 TAGCGGGCCG ATGATGA TGGTGGGCACTCG CCGA T TGGTGA GG-TAAGGGGCGAGGAGA CAGA GGCCCAAATA

Pab sR53 GAGCAACCCG ATGACGA AGGTGGGCACTCT CCGA CT TGATGA GGATGTGGGGCGAGGAGC CAGA GGGTGGTGCG

Pho sR54 ATTAGTTGGG ATGATGA AGTTCGCTAGAA CTGA GAGG TGATGA CGCCCAGGGTAT CTGA CTTTTCCAAT

Pfu sR54 AATAAAAGGG ATGATGA AGTTCGCTAGAC CTGA GGAG TGATGA GCCCTAGGGTAT CTGA CCACAAACTT

Pab sR54 TTAGATGGGA GTGATGA GGTTCGCTAGAG CTGA AGGAT TGATGA TGAGACCCAGGGTAT CTGA CCGCATTAGA

Pho sR55 TTGTAAACCG ATGATGT GTGTCATCCCTG CTGA AAGGGGTCGA TGATGA TGTTTTGATCCCCAT CTGA GGTGCTGGAA

Pfu sR55 TTAGTA-ACCG ATGAAGA GTGTCATCCCTG CTGA AACGGGGTCGA TGATGA GGTATAGTCCCCAC CTGA GGTGTTTCCA

Pab sR55 AAAACCACCG ATGATGA GTGTCATCCCTG CTGA AATCGGGGTCGA TGATGA CGTAAATTCCCCAC CTGA GGTGTTTAAT

Pfu sR56 GTTTGGGCCG ATGAAGA GCGAGCCCGGCC CTGA GGAGA TGATGA AAGCTACCACTT CTGA GGTCATCAAC

Pab sR56 TTAATATCCG ATGAGGA GCGAGCCCGGCC CTGA GCGA TGATGA GAGCTACCACTA CTGA GGTCACCCAA

Pab sR57 ATAATTAGCG ATGATGA ATTCACGAAGG ATGA GG TGAAGA GCCTAATATGGGAGGCCTCG CTGA GGGTTCTCGG

Pho sR58 AGAAAGCCCG ATGATTG GAAGTGGAGTGAG CTGA TGCA TGATGA CCGACTTCCCT CTGA GGGCTTTTTA

Pfu sR58 GAGGAACCCG ATGATTG AAAATGGAGTGAG CTGA GTTAA TGATGA CCGACTTCCCA CTGA GGGCCTCTAG

Pab sR58 AGAAAGCCCG ATGATTG GAAACGGAGTGAG CTGA GGTG TGATGA CCGACTTCCCG CTGA GGGCCTTTTC

Pho sR59 TCTAAGGGCG ATGATGT AGGGTGGCGTCC CTGA CATA TGATGA AGCCTGCGATGG CTGA GCAAATTATT

Pfu sR59 TAATCTGGCG ATGACGA AGGGTGACGTCC CTGA GTGG TGATGA AGCCCGCGATAG CTGA GCAATTCTTT

Pab sR59 AGGTTGGGCG ATGAGGA AGGGTGGCGTCC CTGA GCTCTGTGCCG TGATGA TGCCTGCGATGG CTGA GCAAATATTT

Pho sR60 TATCATCGGG ATGAGGA GTTCAGCCTAAG CTGA GACA TGATGA GGGAGTGACGGA CTGA CCGTTGGCTA

Pfu sR60 ACTTACCGGG ATGAGGA ATTCAGCCTAAG CTGA AGTA TGATGA GGGAGTGACGGA CTGA CCGCAA-AGAG

Pab sR60 CCGGATCGGG ATGAGGA GTTCAGCCTAGG CTGA GGCG TGATGA GGGAGTGACGGA CTGA CCGATTTAGA

5' and 3' ends of sRNAs were not determined experimentally (an invariant 10 nucleotides of sequence flanking the C box and D boxes is displayed). Nucleotide positions not conserved with at least one other Pyrococcus sRNA homolog are displayed in red. sR58-sR60 were first described by Gaspin et al.. as sR38, sR34, sR39.

Name		C Box		D' Box		C' Box		D Box
Pho sR1	`AAAGAAGGCG`	`ATGATGA`	`AGCCTTCCGCAC`	`CTGA`	`ATGA`	`TGAGGA`	`GTGGACGGCTTC`	`CTGA`	`GCCT-ACTCCT`
Pfu sR1	`AGGTAAGGCG`	`ATGATGA`	`TGCCTTCCGCAC`	`CTGA`	`TTGG`	`TGAGGA`	`GTGGACGGCTTC`	`CTGA`	`GCCT-ACTCCT`
Pab sR1	`ATAAATGGCA`	`ATGATGA`	`AGCCTTCCGCAC`	`CTGA`	`ACGG`	`TGAGGA`	`GTGGACGGCTTC`	`CTGA`	`GCCTCACTCC`

Pho sR2	`AAAAAGAGGG`	`ATGATGA`	`GTTTTTCCCTCACT`	`CTGA`	`GGAG`	`TGATGA`	`GGAGCCGATGCA`	`CTGA`	`CCTCGATCAT`
Pfu sR2	`GAAATGGGGG`	`ATGATGA`	`GTTTTTCCCTCACT`	`CTGA`	`TTAG`	`TGATGA`	`GGAGCCGATGCA`	`CTGA`	`CCTCGAGCAT`
Pab sR2	`GAGAAAAGGG`	`ATGATGA`	`GTTTTTCCCTCACT`	`CTGA`	`GCCG`	`TGATGA`	`GGAGCCGATGCT`	`CTGA`	`CCTCTGCCAT`

Pho sR3	`AATTGTGGCG`	`ATGATGA`	`ATAGCAAGCCAG`	`CTGA`	`AGAG`	`TGATGA`	`AGTGAACACCCC`	`CTGA`	`GCCTACCTAA`
Pfu sR3	`ACCTCCGGCG`	`ATGATGA`	`ATAGCAAGCCAC`	`CTGA`	`AGAG`	`TGATGA`	`GGTGAACACCCC`	`CTGA`	`GCCTATTCCA`
Pab sR3	`TATGAAGGCG`	`ATGATGA`	`GTAGCAAGCCAC`	`CTGA`	`CCTA`	`TGATGA`	`GGTGAACACCCC`	`CTGA`	`GCCAATTTCA`

Pho sR4	`CCGAGTTGGG`	`ATGATGA`	`GGGAGATTTCGG`	`CCGA`	`GTGG`	`TGAGGA`	`GACTCGCATGGG`	`CTGA`	`CCTTTCTAAG`
Pfu sR4	`AGCATAAGGG`	`ATGATGA`	`AGGAGATTTCGG`	`CAGA`	`GGTG`	`TGAAGA`	`GACTCGCATGGG`	`CTGA`	`CCACCACCTT`
Pab sR4	`GAAGGATGGG`	`ATGATGA`	`AGGAGATTTCGG`	`CCGA`	`AAGG`	`TGAGGA`	`AACTCGCATGGG`	`CTGA`	`CCTTTCTCAG`

Pho sR5	`ATAAGGTGTG`	`ATGATGA`	`ACGCCAT-CGATA`	`CTGA`	`GATA`	`TGATGA`	`CCGGATTCCTGG`	`CTGA`	`TTTCTTTTAT`
Pfu sR5	`CTTATTTTGA`	`ATGATGA`	`GCGCCATCCGATA`	`CTGA`	`GGGCA`	`TGATGA`	`CCGGATTCCTGG`	`CTGA`	`TCTCATTTTC`
Pab sR5	`AAGACAATAG`	`ATGATGA`	`GCGCCAT-CGATG`	`CTGA`	`GGAG`	`TGATGA`	`CCGGATTCCTGG`	`CTGA`	`TCTTTATTCT`

Pho sR6	`TGGAAAT-GGG`	`ATGATGA`	`AGTTTGCTACCC`	`CTGA`	`AGAA`	`TGATGA`	`ACCCTGCCGTTA`	`CTGA`	`CCATTTAGCT`
Pfu sR6	`AAAAATAGGG`	`ATGATGA`	`GATTTGCTACCT`	`CTGA`	`AAATAA`	`TGATGA`	`ACCCTGCCGTTA`	`CTGA`	`CCGTTTAACT`
Pab sR6	`CCAATGAGGA`	`ATGATGA`	`GATTTGCTACCA`	`CTGA`	`GCAG`	`TGATGA`	`GCCCTGCCGTTA`	`CTGA`	`CCTTTTACTA`

Pho sR7	`GTAATCCGGG`	`ATGATGA`	`ACCTCCATCCCAA-`	`CTGA`	`ATAAA`	`TGATGA`	`ATGCACATCAGG`	`CTGA`	`CATTACCTTT`
Pfu sR7	`GAGATTTTCG`	`ATGATGA`	`GCCTCCATCCCATG`	`CTGA`	`AGGG`	`TGATGA`	`GTGCACATCAGG`	`CTGA`	`GCTTTATAAC`
Pab sR7	`ATTATAAGGG`	`ATGATGA`	`GCCTCCAT-CCAAG`	`CTGA`	`GCAAG`	`TGATGA`	`GTGCACATCAGG`	`CTGA`	`ACCTTTTTAT`

Pho sR8	`CGAATAGGCG`	`ATGATGA`	`GCTCCATCCCTAC`	`CTGA`	`GTTG`	`TGATGA`	`ATGTAGCGCGCT`	`CTGA`	`GCAACCCTTA`
Pfu sR8	`TCAATGAGCA`	`ATGATGA`	`GCTCTATCCCTAT`	`CTGA`	`CCCA`	`TGATGA`	`CTGTAGCGCGCG`	`CTGA`	`GCTACTCCTT`
Pab sR8	`TTGAAAGGCG`	`ATGATGA`	`GCTCCATCCCTAT`	`CTGA`	`GTTG`	`TGATGA`	`CTGTAGCGCGCT`	`CTGA`	`GCTACAGGCT`

Pho sR9	`CCGACAGGGG`	`ATGAAGA`	`GCTTTTGCTTTG`	`CTGA`	`GCAGA`	`TGATGA`	`CCACGCCCTTCG`	`CTGA`	`CCTGCTATTT`
Pfu sR9	`CCACAATGGG`	`ATGATGA`	`CCTTTTGCTTTA`	`CTGA`	`ACACA`	`TGATGA`	`CCACGCCCTTCG`	`CTGA`	`CCTAAATATT`
Pab sR9	`GCCTACAGTT`	`ATGATGA`	`ACTTTTGCTTTG`	`CTGA`	`TGTGG`	`TGATGA`	`GCACGCCCTTCG`	`CTGA`	`TACTCTCTCG`

Pho sR10	`TTAGCGACTA`	`ATGATGA`	`ACTACTCCCGG`	`CTGA`	`GGGG`	`TGATGA`	`ACCACCTACCGG`	`CTGA`	`GGTGAAAGCA`
Pfu sR10	`ATTATGGCAG`	`ATGATGA`	`GCTACTCCCGG`	`CTGA`	`AAGA`	`TGATGA`	`ACCACCTACCGG`	`CTGA`	`GGTTATGGAA`
Pab sR10	`AACGGTAGCG`	`ATGATGA`	`ACTACTCCCGG`	`CTGA`	`GCTG`	`TGATGA`	`ACCACCTACCGG`	`CTGA`	`GGTGGAAACA`

Pho sR11	`CTCTAGCGGG`	`ATGATGA`	`CTTTGCCGAGTG`	`CTGA`	`GCTGG`	`TGATGA`	`GTAAACAGTCGT`	`CTGA`	`CTTTCCCTTT`
Pfu sR11	`GCAGGAGGGG`	`ATGATGA`	`GTTTGCCGAGTG`	`CTGA`	`GCTAG`	`TGATGA`	`ATAAACAGTCGC`	`CTGA`	`CTTCCCCTCT`
Pab sR11	`CTTTAATGGG`	`ATGATGA`	`CTTTGCCGAGTG`	`CTGA`	`GGAAG`	`TGATGA`	`GTAAACAGTCGC`	`CTGA`	`CCCCCTGCTT`

Pho sR12	`ATCGGCTTGG`	`ATGATGA`	`GCGTTTACCGGT`	`CTGA`	`GCTG`	`TGATGA`	`TATCGGCACTGT`	`CTGA`	`CTAGTAATCT`
Pfu sR12	`AAGAAAGGGG`	`ATGATGA`	`GCGTTTACCGGT`	`CTGA`	`GTTG`	`TGATGA`	`TACTGGCACTGT`	`CTGA`	`CCTTAGTAGT`
Pab sR12	`ATCGGCTGGG`	`ATGATGA`	`GCGTTTACCGGT`	`CTGA`	`GCTG`	`TGATGA`	`CATCGGCACTGT`	`CTGA`	`CTAGTAGTCA`

Pho sR13	`TCATTGTTGG`	`GTGATGA`	`GATGGCGGATTG`	`CTGA`	`GAG-A`	`TGATGA`	`GGACCTTAGGGG`	`CTGA`	`TTAAATTTCG`
Pfu sR13	`TCCTACTGGT`	`GTGATGA`	`AAAGGCGGATTG`	`CTGA`	`GAGGA`	`TGATGA`	`AGACCTTAGGGG`	`CTGA`	`TCACACCTCA`
Pab sR13	`TATTACTTGA`	`ATGATGA`	`GATGGCGGATTG`	`CTGA`	`GCTG-`	`TGATGA`	`AGACCTTAGGGT`	`CTGA`	`CTTCCCAAAA`

Pho sR14	`CTATTAACCA`	`ATGATGA`	`CGGATCAACCGG`	`CTGA`	`TCGAA`	`TGATGA`	`CGTCCGCATCAC`	`CTGA`	`GGGTTTCAAG`
Pfu sR14	`CTATCACCCA`	`ATGATGA`	`TGGATCAACCGG`	`CTGA`	`AGTA`	`TGATGA`	`GGTCCGCATCAC`	`CTGA`	`GGGGATGGAT`
Pab sR14	`AGACGATCCG`	`ATGATGA`	`TGGATCAACCGG`	`CTGA`	`GTGG`	`TGATGA`	`AGTCCGCATCAC`	`CTGA`	`GGCTCTCAAG`

Pho sR15	`AGATGAAGAG`	`ATGATGA`	`GTAAACCCGTTG`	`CTGA`	`GCGG`	`TGATGA`	`GAGGATCGACTAG`	`CTGA`	`ACAACATCTT`
Pfu sR15	`TATGCATGAG`	`ATGATGA`	`ATAAACCCGTTG`	`CTGA`	`AAAA`	`TGATGA`	`GAGGATCGACTAG`	`CTGA`	`CTACAGCTCA`
Pab sR15	`ATGTGTAGTG`	`ATGATGA`	`TTAAACCCGTTG`	`CTGA`	`GAGG`	`TGATGA`	`GGGGACCGACTAG`	`CTGA`	`ACAACACTTA`

Pho sR16	`ATCAAGTCTG`	`ATGATGA`	`ACCTTCCCCTCAC`	`CTGA`	`AAGG`	`TGATGA`	`GCACACCGGTAGG`	`CTGA`	`GGGTGATAAT`
Pfu sR16	`TGTATATCTG`	`ATGATGA`	`TCCTTCCCCTCAA`	`CTGA`	`GAGG`	`TGATGA`	`GCACACCGGTAGG`	`CTGA`	`GG-TGATAGTA`
Pab sR16	`GTTTCCATAG`	`ATGATGA`	`GCCTTCCCCTCAC`	`CTGA`	`GTGG`	`TGATGA`	`GCACACCGGTAGG`	`CTGA`	`GGGTGATATT`

Pho sR17	`ACGGTCTGCG`	`ATGATGA`	`GAGCGAACTGCA`	`CTGA`	`AAAG`	`TGATGA`	`CAGGGCCTTG`	`CTGA`	`GCGGTGATCG`
Pfu sR17	`AAGATGCGCG`	`ATGAAGA`	`AAGCGAACTGCT`	`CTGA`	`GAGA`	`TGATGA`	`AAAGGGCCTAA`	`CAGA`	`GCGTGAGAGG`
Pab sR17	`ACGGTTTGCG`	`ATGATGA`	`AAGCGAACTGCA`	`CTGA`	`AAAG`	`TGATGA`	`GAGGGCCTCG`	`CTGA`	`GCGGTGATGT`

Pho sR18	`TTTATTTTTA`	`ATGATGA`	`AACAGCCAGGACC`	`CTGA`	`TGGGA`	`TGATGA`	`GTGGTGGGCTTAG`	`CTGA`	`TGTTGCGGTA`
Pfu sR18	`TTAATTTTTG`	`ATGATGA`	`AACAGCCAGGACC`	`CTGA`	`TGAGA`	`TGATGA`	`ATGGTGGGCTTAG`	`CTGA`	`CGTAGCTGTT`
Pab sR18	`TCTATTTTTG`	`ATGATGA`	`TACAGCCAGGACC`	`CTGA`	`TGGGA`	`TGATGA`	`GTGGTGGGCTTAG`	`CTGA`	`TGTTGCCGTT`

Pho sR19	`TGGCGGGCTC`	`GTGATGA`	`GCTTTCCCTACGGC`	`CCGA`	`GC-TTAGGCGA`	`TGAGGA`	`ATACAGCCAGGG`	`CTGA`	`TTTTGGTGAT`
Pfu sR19	`TGGCGGGCTT`	`ATGATGA`	`ACTTTCCCTACGGC`	`CTGA`	`GCGTCACGCGA`	`TGAGGA`	`ATACAGCCAGGG`	`CTGA`	`TGAAGGTGAT`
Pab sR19	`TGGCGGGCAT`	`ATGATGA`	`GCTTTCCCTACGGC`	`CCGA`	`GC-TCACGCGA`	`TGAGGA`	`ATACAGCCAGGG`	`CTGA`	`TTTCGGTGAT`

Pho sR20	`ATGAATGGCG`	`ATGATGA`	`GGCCTCGATTGG`	`CTGA`	`AT--`	`CGATGA`	`TTGAGAGGGACTTGG`	`CTGA`	`GCGGTGATTA`
Pfu sR20	`TAGAGGAGCA`	`ATGATGA`	`AGCCTCGATTGG`	`CTGA`	`TT--`	`TGATGA`	`TTGGGAGGGACTTGG`	`CTGA`	`GCGGTGATTA`
Pab sR20	`GAGGACCGCG`	`ATGATGA`	`AGCCTCGATTGG`	`CTGA`	`ATCG`	`CGATGA`	`TTGGGAGGGACTTGG`	`CCGA`	`GCGGTGGTTA`

Pho sR21	`TACCATGCCG`	`ATGATGA`	`GACCGGTACTGG`	`CCGA`	`AGTA`	`TGATGA`	`GCACTCGGTTAG`	`CTGA`	`GGCCTGAAAA`
Pfu sR21	`TTGTCTGTCG`	`ATGACGA`	`AACCGGCACTAT`	`CTGA`	`ATGA`	`TGATGA`	`GCACTCGGTTGT`	`CTGA`	`GACTACTAAA`
Pab sR21	`TAGCTTGCCA`	`ATGATGA`	`GACCGGCACTAA`	`CTGA`	`GTTG`	`TGATGA`	`GCACTCGGTTGG`	`CTGA`	`GACTGAAAAC`

Pho sR22	`GGAACATCCG`	`ATGATGG`	`GAACAGGGTAGCTG`	`CCGA`	`GT`	`TGATGA`	`GGAAGCCGTTCCAGA`	`CTGA`	`GGAAAGAAAA`
Pfu sR22	`TAATTGCCCG`	`ATGATGG`	`GAACAGGGTAGCTG`	`CCGA`	`GC`	`TGATGA`	`GGAAGCCGTTCCAGA`	`CTGA`	`GGGAAAAGTT`
Pab sR22	`GAAATGCCCG`	`ATGATGC`	`CAACAGGGTAGCTG`	`CCGA`	`GG`	`CGATGA`	`GGAAGCCGTTCCAGA`	`CTGA`	`GGGCGTAGCA`

Pho sR23	`TCCTATTAAG`	`ATGATGA`	`ATCTGGAGCCCC`	`CTGA`	`TCGG`	`TGATGA`	`TCAGTCTGCGGAG`	`CTGA`	`TAACATGATT`
Pfu sR23	`GTAAAGTTGA`	`ATGATGA`	`ATCTGGAGCCCA`	`CTGA`	`TTTAA`	`TGATGA`	`CCTGTTCGCGGGG`	`CTGA`	`TGCTGTGATA`
Pab sR23	`ATACTAAAAG`	`ATGATGA`	`ATCTGGAGCCCC`	`CTGA`	`GTGA`	`TGATGA`	`GCAGTCTGCGGAG`	`CTGA`	`TATCATGATT`

Pho sR24	`AAGTTACCCT`	`ATGATGA`	`GAGAGCTGTTAA`	`ATGA`	`G`	`CGGTGA`	`TTAAAGGATGGCTGG`	`CTGA`	`GGGTGAGATA`
Pfu sR24	`AAATTTCCCT`	`ATGATGA`	`GAGAGCTGTTAA`	`ATGA`	`G`	`TGGTGA`	`TTAGAGGATGGCTGG`	`CTGA`	`GGGTGAGAGA`
Pab sR24	`AAGTGGCCCT`	`ATGATGA`	`GAGAGCTGTTAA`	`ATGA`	`T`	`TGATGA`	`TTAGAGGATGGCTGG`	`CTGA`	`GGGGATAATC`

Pho sR25	`TGAAGGTTCA`	`ATGATGA`	`AAACTCCCTGAT`	`CTGA`	`AAAATAAA`	`TGATGA`	`AGACCGGTTCA`	`CTGA`	`GATTTCTGCT`
Pfu sR25	`CAACGATGAG`	`ATGATGA`	`GAACTCCCTGAT`	`CTGA`	`GCGG`	`TGATGA`	`GGACCGGTGAT`	`CTGA`	`AAAATAGTAA`
Pab sR25	`TGGGCCTGCG`	`ATGATGA`	`TAACTCCCTGAC`	`CTGA`	`AAGG`	`TGATGA`	`GGACCGGTTCA`	`CTGA`	`GCTTTGGATT`

Pho sR26	`TAAAAAGGCG`	`ATGATGA`	`GTGATGGGCGAA`	`CTGA`	`AAACA`	`TGATGA`	`AGGTAGGTGATCT`	`CTGA`	`GCTATCATCG`
Pfu sR26	`AAAAGAGGCA`	`ATGATGA`	`GTGATGGGCGAA`	`CTGA`	`AATAG`	`TGATGA`	`CGGTAGGTGATCT`	`CTGA`	`GCCAACTTAC`
Pab sR26	`GGGCTTGGCG`	`ATGATGA`	`GTGATGGGCGAA`	`CTGA`	`GAAG`	`TGATGA`	`TGGTAGGTGATCT`	`CTGA`	`GCCAATCCGG`

Pho sR27	`TAGCTTCAGA`	`GTGATGA`	`GCCCGCGCAGCG`	`CTGA`	`TAGA`	`TGATGA`	`AGATTTTAAGTG`	`CTGA`	`CTTCTAACCT`
Pfu sR27	`TGTGGTAAAG`	`ATGATGA`	`ACCCGCGCAGCT`	`CTGA`	`AGGGA`	`TGATGA`	`GGATCTTAAGTG`	`CTGA`	`TCTCTACCAA`
Pab sR27	`CTTGCCTCGA`	`GTGATGA`	`GCCCGCGCAGCG`	`CTGA`	`GCAAGA`	`TGATGA`	`AGATTTTAAGTG`	`CTGA`	`CGCCCAATAA`

Pho sR28	`ATACTTAGGA`	`ATGATGA`	`CCGGTTTCGGGA`	`CTGA`	`ACGA`	`TGATGA`	`CACCAGCTATCG`	`CTGA`	`CCTTGTCTAA`
Pfu sR28	`AAGCGCAGAG`	`ATGATGA`	`CCGGTTTCGGAT`	`CCGA`	`TGGA`	`TGAGGA`	`CATCAGCTATCG`	`CTGA`	`TCTCTCATTC`
Pab sR28	`TAAACCTTGG`	`ATGATGA`	`CCGGTTTCGGGA`	`CTGA`	`GCTA`	`TGATGA`	`CACCAGCTATCG`	`CTGA`	`CTCCTCTTAC`

Pho sR29	`TTGTGGGCGG`	`ATGATGA`	`TCCTTGCCCAGC`	`CTGA`	`GGAG`	`TGATGA`	`AGTCGGTATTAG`	`CTGA`	`CGCTGTGTTT`
Pfu sR29	`GGATTAGCGG`	`ATGATGT`	`GCCTTGCCCAGC`	`CTGA`	`AAGG`	`TGATGA`	`TGTCGGTATTAG`	`CTGA`	`CGCTTTTCCG`
Pab sR29	`GCTATGGCGG`	`ATGACGA`	`GCCTTGCCCAGC`	`CTGA`	`AAGG`	`TGATGA`	`TGTCGGTATTAG`	`CTGA`	`CGCCCAGGAG`

Pho sR30	`ATTATTGTGG`	`ATGATGA`	`GTAGTCGGAAGG`	`CTGA`	`GCTGA`	`TGATGA`	`AGGACGCCCATGT`	`CTGA`	`TCCTTATCTT`
Pfu sR30	`ATTATTGTGG`	`ATGATGA`	`GTAGTCAGAAGG`	`CTGA`	`GTTGA`	`TGATGA`	`AGGACGCCCACGC`	`CTGA`	`CTCTTTTCTA`
Pab sR30	`ATAATCGTGG`	`ATGATGA`	`TTAGTCGGAAGG`	`CTGA`	`AGTG-`	`TGATGA`	`AGGACGCCCATGG`	`CTGA`	`ACAAAGCATA`

Pho sR31	`GGGATTAAAG`	`ATGATGA`	`ACTCGGCAGGTC`	`CTGA`	`TTCG`	`TGATGA`	`GGATCTTGAGTG`	`CTGA`	`TTTACCTTAC`
Pfu sR31	`TTGGGTTGAG`	`ATGATGA`	`ACTCGGCAGGTC`	`CTGA`	`AGGA`	`TGATGA`	`GGATCTTGAGTG`	`CTGA`	`TCACCTAACT`
Pab sR31	`GAAGATGAAG`	`ATGATGA`	`GCTCGGCAGGTC`	`CTGA`	`GGAG`	`TGATGA`	`GGATCTTGAGTG`	`CTGA`	`TTCACCTTAC`

Pho sR32	`TAAAATGGAG`	`ATGATGA`	`GCTTGGCCGCTAC`	`CCGA`	`G`	`TGATGA`	`GGGCC-AAACTCCGGTG`	`CTGA`	`TCACATTGCA`
Pfu sR32	`AAGGAGTGAG`	`ATGATGA`	`GCTTGGCCGCTTC`	`CCGA`	`G`	`TGGTGA`	`GGGTCTAAACTCCGGTG`	`CTGA`	`TGAAGTCAAA`
Pab sR32	`AATCCGAGAA`	`ATGATGA`	`GCTTGGCCGCTAC`	`CCGA`	`T`	`CGATGA`	`GGGT-TAAACTCCGGTG`	`CTGA`	`TCATAGGATG`

Pho sR33	`CCTCTTTGAC`	`GTGATGA`	`GGAATCGGGGAG`	`CTGA`	`AGCTA`	`TGATGA`	`GATCCGCCAACG`	`CTGA`	`TTTTCCAAAT`

Pho sR34	`ATCCAAGCCG`	`ATGAGGA`	`TCGTTAGCCACG`	`CTGA`	`GGA`	`TGATGA`	`TAAGAGGGTTAG`	`CCGA`	`GGCTTATTTT`
Pfu sR34	`TATATGACCG`	`ATGAGGA`	`GCGTTAGCCACG`	`CTGA`	`AGA`	`TGATGA`	`CAAGAGGGTTAG`	`CCGA`	`GGTCTTCTCT`
Pab sR34	`ATCCCAGCCG`	`ATGAGGA`	`CCGTTAGCCACG`	`CTGA`	`GGA`	`TGATGA`	`TAAGAGGGTTAG`	`CCGA`	`GGCTTATTTT`

Pho sR35	`AGACGAAAAA`	`ATGATGA`	`GTACGGGGCCAC`	`CTGA`	`GCGG`	`TGATGA`	`GGTTTCTCCCAAGT`	`CTGA`	`TTACCTAACC`
Pab sR35	`ACAAAATAAA`	`ATGATGA`	`GTACGGGGCCAC`	`CTGA`	`ATGG`	`TGATGA`	`GGTTTCTCCCAAGG`	`CTGA`	`TTACCTTACC`

Pho sR36	`GGTTTGGTGG`	`ATGAAGA`	`GAGGGTAGGTAG`	`CTGA`	`TCTG`	`TGATGA`	`ACTAATCGGCCC`	`CTGA`	`CACGGGGTGA`
Pfu sR36	`GAATAGGTGG`	`ATGAAGA`	`AAGGGTAGGTAG`	`CTGA`	`GCGG`	`TGATGA`	`TCTAATCGGCCC`	`CTGA`	`CACCGCATAA`
Pab sR36	`GAATTGGTGG`	`ATGAGGA`	`GAGGGTAGGTAG`	`CTGA`	`GTTA`	`TGATGA`	`ACTAATCGGCCC`	`CCGA`	`CACCTATTGG`

Pho sR37	`GGTTAGAGCG`	`ATGATGT`	`AGATTAGCCCCGA`	`CTGA`	`GCGG`	`TGATGA`	`GGCTGGCCCATCG`	`CTGA`	`GTCCCAAAAA`
Pfu sR37	`AAGCTAGGCG`	`ATGATGT`	`AGATTAGCCCCGA`	`CTGA`	`GCGG`	`TGATGA`	`AGCTGGCCCATCG`	`CTGA`	`GTCTTTAAGA`
Pab sR37	`AAGCAAAGCG`	`ATGATGT`	`AGATTAGCCCCGA`	`CTGA`	`GTTG`	`TGATGA`	`GGCTGGCCCATCG`	`CTGA`	`GCTAGATGCT`

Pho sR38	`GGAGTAGGCG`	`ATGATTT`	`GACTCCGGAAAAG`	`CTGA`	`ATGA`	`TGATGA`	`AGTCCAGCCCGA`	`ATGA`	`GCCGGGGTGA`
Pfu sR38	`TAGGGAGGCG`	`ATGATTT`	`GACTCCGGAAAAT`	`CTGA`	`TCGA`	`TGATGA`	`AGTCCAGCCCGA`	`ATGA`	`GCCGAGGTGA`
Pab sR38	`AAAATAGGCG`	`ATGATTT`	`GACTCCGGAAAAG`	`CTGA`	`GCGA`	`TGATGA`	`AGTCCAGCCCGA`	`ATGA`	`GCCGAGGTGA`

Pho sR39	`AAAGGGGGTG`	`ATGAGGA`	`AAATTTCGCTAG`	`CTGA`	`AGTGAAAGA`	`TGATGA`	`ATACCCTCGCAA`	`CCGA`	`GCCTATTTTA`
Pfu sR39	`AAAATGGGCG`	`ATGAAGA`	`TAATTTCGCTAG`	`CCGA`	`AAAATA`	`AGATGA`	`GGAGTACCCTCGCAA`	`CTGA`	`GCCTTACTTA`
Pab sR39	`TAAGTAGGCG`	`ATGAAGA`	`AAATTTCGCTAG`	`CTGA`	`AAAG-`	`TGATGA`	`GTACCCTCGCAA`	`CTGA`	`GCCTATTTGA`

Pho sR40	`TCCAGAGGCC`	`ATGAGGA`	`TAGGCGGGTTTG`	`CTGA`	`CCTCGGGGCG`	`TGATGA`	`ACCTTTGGAGCC`	`CCGA`	`GGGCCGGAGA`
Pfu sR40	`TCCAGAGGCC`	`ATGAGGA`	`TAGGCGGGTTTG`	`CTGA`	`CCTCGGGGCG`	`TGATGA`	`ACCTTTGGAGCC`	`CCGA`	`GGGCCGGAGA`
Pab sR40	`TCCAGAGGCC`	`ATGAGGA`	`CAGGCGGGTTTG`	`CTGA`	`CCTCGGGGCG`	`TGATGA`	`ACCTTTGGAGCC`	`CCGA`	`GGGCCGGAGA`

Pho sR41	`TTGAAGGCGG`	`ATGATGA`	`AGGCTAATTT`	`CGGA`	`TTGG`	`TGAAGA`	`GCCCTATGAGCG`	`CTGA`	`CGCTATGATT`
Pfu sR41	`GCACCGACGG`	`ATGATGA`	`AATGTAAAGA`	`CGGA`	`AAGA`	`TGAAGA`	`GCCCTATGAGCG`	`CTGA`	`CGCCCTTTCT`
Pab sR41	`ACCTTGGCGG`	`ATGATGA`	`GCTAGTAA-TT`	`CTGA`	`GCGA`	`TGAAGA`	`GCCCTATGAGCG`	`CTGA`	`CGCCTTGGAA`

Pho sR42	`CTACTTTGTG`	`ATGATGA`	`TCTTCACGGTACC`	`CTGA`	`GAGGCGCTCGA`	`TGATGA`	`GCCCCCTCTCAA`	`CTGA`	`TCATAGCTTT`
Pfu sR42	`TTATAGCTTG`	`ATGATGA`	`ACTTCACGGTACC`	`CTGA`	`GTTCTAAAAACGA`	`TGATGA`	`GCCCCCTCTCGT`	`CTGA`	`TTACCTTTTT`
Pab sR42	`ATAAGCTATG`	`GTGATGA`	`TCTTCACGGTACC`	`CTGA`	`GAGACCCTCGA`	`TGATGA`	`GCCCCCTCTCAA`	`CTGA`	`CCTAAATTCT`

Pho sR43	`AGTAATTGAG`	`ATGAAGA`	`AAAAGCACCTCCA`	`CTGA`	`GTGA`	`TGATGA`	`CACGCCCACGGT`	`CTGA`	`TCAAACTGTT`
Pfu sR43	`TTGAGGGACG`	`ATGAAGA`	`GAAAGCACCTCCA`	`CGGA`	`TAGA`	`TGAAGA`	`AACGCCCACGGA`	`CTGA`	`GTCTTCACTC`
Pab sR43	`AAGTAGGGAG`	`ATGAAGA`	`GAAAGCACCTCCA`	`CTGA`	`TTGA`	`TGATGA`	`AACGCCCACGGT`	`CGGA`	`TTTCCTTTCC`

Pho sR44	`CGTCAAGGCG`	`ATGAGGA`	`GATCGGTCTTGT`	`CTGA`	`AGAA`	`TGATGA`	`AAGTGGTCACCG`	`CTGA`	`GCCTTAAGAA`
Pfu sR44	`AAATTTGGCT`	`ATGAGGA`	`AATCGGTCTTAG`	`CTGA`	`GCTTA`	`TGATGA`	`AAGTGGTCACCG`	`CCGA`	`GCCAAGTATA`
Pab sR44	`CAAGAAGGCA`	`ATGATGA`	`AATCGGTCTTGT`	`CCGA`	`GGAG`	`TGATGA`	`TAGTGGTCACCG`	`CTGA`	`GCCACCAACT`

Pho sR45	`AAAAAACGGG`	`ATGAGGA`	`AGCCGAGGACAC`	`CTGA`	`AGGA`	`TGATGA`	`CTCTTCGCTTCG`	`CCGA`	`CCGGCGGTGA`
Pfu sR45	`AAAAGGCGGG`	`ATGAGGA`	`AGCCGAGGACAC`	`CTGA`	`TGGA`	`TGATGA`	`CTCTTCGCTTCG`	`CCGA`	`CCGGTGGTGA`
Pab sR45	`AAAAAACGGG`	`ATGAGGA`	`AGCCGAGGACAC`	`CTGA`	`ATTG`	`TGATGA`	`ATCTTCGCTTCG`	`CCGA`	`CCGAGGTGAT`

Pho sR46	`TCAAAAGGCA`	`ATGAGGA`	`ATGAATCCAATG`	`CTGA`	`GCTTAGG`	`CAATGA`	`TTGGCCCCAGAGTGG`	`CCGA`	`GCCTTCATAT`
Pfu sR46	`CACTTAGGCG`	`ATGACGA`	`CTGAATCCAATG`	`CTGA`	`GCAAAGG`	`CGATGA`	`TTGGCCCCAGAGTGG`	`CTGA`	`GCCCTAATTT`
Pab sR46	`CTCAAGGGCA`	`ATGAGGA`	`ATGAATCCAATG`	`CTGA`	`GCAAAGG`	`CAATGA`	`TTGACCCCAGAGTGG`	`CCGA`	`GCCTCTATAT`

Pho sR47	`AGTTCAACCG`	`ATGAAGA`	`GCCTTTTGGGCC`	`CTGA`	`GAGA`	`TGATGA`	`AAGCCCCCCTAT`	`CTGA`	`GGGGGATAAA`
Pab sR47	`GAGTATTGGG`	`ATGATGA`	`AACTCCTTTCGGGCA`	`CTGA`	`TCCG`	`TGATGA`	`AGGCCCTCCTAT`	`CTGA`	`GCATCCCAAC`

Pfu sR48	`CTTTCTCTTC`	`TTGATGT`	`GGAACCCACCCTTGG`	`CTGA`	`ATGA`	`TGATGA`	`GGCCTCGTGGGTT`	`CCGA`	`AGTTTTTATA`
Pab sR48	`ATTTTTCTCG`	`AGGATGA`	`TCCCACCCTTGG`	`CTGA`	`AGTG`	`TGATGA`	`TGTCTCGT-GGTT`	`CTGA`	`GAGAAGTTAG`

Pho sR49	`TTCCTGGGCG`	`ATGAAGA`	`ACTGGATCCGAG`	`CTGA`	`TCTCA`	`TGATGA`	`AGGAGGTTTAAC`	`CTGA`	`GCCTCCATGA`
Pab sR49	`TTCCTGGGCG`	`ATGAAGA`	`ACTGGATCCGAG`	`CTGA`	`GCTTA`	`TGATGA`	`TGGAGGTTTAAC`	`CTGA`	`GCCTTCATAA`

Pfu sR50	`CCTATTGTAG`	`ATGATGA`	`GGCCATCCCCT`	`CTGA`	`TCTG`	`TGATGA`	`GTGGGTGAGCTGG`	`CTGA`	`TACTTTATTC`
Pab sR50	`ATAAGGAGGG`	`ATGATGA`	`GGCCTACCTCG`	`CTGA`	`GCTG`	`TGATGA`	`GTGGGTGAGCTGG`	`CTGA`	`CATTTCATTA`

Pfu sR51	`TATAGCTCCG`	`ATGATGA`	`GTCTCGCTCGG`	`CTGA`	`ATGA`	`TGATGT`	`AGGGCATACTGG`	`CTGA`	`GGTGATAGTA`
Pab sR51	`AACCTTGTTG`	`ATGATGA`	`ACTCGCTTGTTG`	`CTGA`	`AGGG`	`TGATGA`	`AGGGCATACTGG`	`CTGA`	`TTTGGAGGTT`

Pfu sR52	`TAAGGAGAAG`	`AGGATGA`	`AAAAGAAGAAAAGG`	`CTGA`	`ATAGA`	`TGATGA`	`GAGGGGACCTCT`	`CTGA`	`TGAAAGTTGG`
Pab sR52	`AGGTAGGGGG`	`AGGATGA`	`AGAAAAAGTTCAAAGG`	`CTGA`	`AAGG`	`TGATGA`	`GAGGGGACCTCG`	`CTGA`	`TGTTGATCGG`

Pho sR53	`AGTCCGGCCG`	`ATGACGA`	`AGGTGGGCACTCT`	`CCGA`	`TT`	`TGATGA`	`GGATGTGGGGCGAGGAGC`	`CAGA`	`GGCTTTATAA`
Pfu sR53	`TAGCGGGCCG`	`ATGATGA`	`TGGTGGGCACTCG`	`CCGA`	`T`	`TGGTGA`	`GG-TAAGGGGCGAGGAGA`	`CAGA`	`GGCCCAAATA`
Pab sR53	`GAGCAACCCG`	`ATGACGA`	`AGGTGGGCACTCT`	`CCGA`	`CT`	`TGATGA`	`GGATGTGGGGCGAGGAGC`	`CAGA`	`GGGTGGTGCG`

Pho sR54	`ATTAGTTGGG`	`ATGATGA`	`AGTTCGCTAGAA`	`CTGA`	`GAGG`	`TGATGA`	`CGCCCAGGGTAT`	`CTGA`	`CTTTTCCAAT`
Pfu sR54	`AATAAAAGGG`	`ATGATGA`	`AGTTCGCTAGAC`	`CTGA`	`GGAG`	`TGATGA`	`GCCCTAGGGTAT`	`CTGA`	`CCACAAACTT`
Pab sR54	`TTAGATGGGA`	`GTGATGA`	`GGTTCGCTAGAG`	`CTGA`	`AGGAT`	`TGATGA`	`TGAGACCCAGGGTAT`	`CTGA`	`CCGCATTAGA`

Pho sR55	`TTGTAAACCG`	`ATGATGT`	`GTGTCATCCCTG`	`CTGA`	`AAGGGGTCGA`	`TGATGA`	`TGTTTTGATCCCCAT`	`CTGA`	`GGTGCTGGAA`
Pfu sR55	`TTAGTA-ACCG`	`ATGAAGA`	`GTGTCATCCCTG`	`CTGA`	`AACGGGGTCGA`	`TGATGA`	`GGTATAGTCCCCAC`	`CTGA`	`GGTGTTTCCA`
Pab sR55	`AAAACCACCG`	`ATGATGA`	`GTGTCATCCCTG`	`CTGA`	`AATCGGGGTCGA`	`TGATGA`	`CGTAAATTCCCCAC`	`CTGA`	`GGTGTTTAAT`

Pfu sR56	`GTTTGGGCCG`	`ATGAAGA`	`GCGAGCCCGGCC`	`CTGA`	`GGAGA`	`TGATGA`	`AAGCTACCACTT`	`CTGA`	`GGTCATCAAC`
Pab sR56	`TTAATATCCG`	`ATGAGGA`	`GCGAGCCCGGCC`	`CTGA`	`GCGA`	`TGATGA`	`GAGCTACCACTA`	`CTGA`	`GGTCACCCAA`

Pab sR57	`ATAATTAGCG`	`ATGATGA`	`ATTCACGAAGG`	`ATGA`	`GG`	`TGAAGA`	`GCCTAATATGGGAGGCCTCG`	`CTGA`	`GGGTTCTCGG`

Pho sR58	`AGAAAGCCCG`	`ATGATTG`	`GAAGTGGAGTGAG`	`CTGA`	`TGCA`	`TGATGA`	`CCGACTTCCCT`	`CTGA`	`GGGCTTTTTA`
Pfu sR58	`GAGGAACCCG`	`ATGATTG`	`AAAATGGAGTGAG`	`CTGA`	`GTTAA`	`TGATGA`	`CCGACTTCCCA`	`CTGA`	`GGGCCTCTAG`
Pab sR58	`AGAAAGCCCG`	`ATGATTG`	`GAAACGGAGTGAG`	`CTGA`	`GGTG`	`TGATGA`	`CCGACTTCCCG`	`CTGA`	`GGGCCTTTTC`

Pho sR59	`TCTAAGGGCG`	`ATGATGT`	`AGGGTGGCGTCC`	`CTGA`	`CATA`	`TGATGA`	`AGCCTGCGATGG`	`CTGA`	`GCAAATTATT`
Pfu sR59	`TAATCTGGCG`	`ATGACGA`	`AGGGTGACGTCC`	`CTGA`	`GTGG`	`TGATGA`	`AGCCCGCGATAG`	`CTGA`	`GCAATTCTTT`
Pab sR59	`AGGTTGGGCG`	`ATGAGGA`	`AGGGTGGCGTCC`	`CTGA`	`GCTCTGTGCCG`	`TGATGA`	`TGCCTGCGATGG`	`CTGA`	`GCAAATATTT`

Pho sR60	`TATCATCGGG`	`ATGAGGA`	`GTTCAGCCTAAG`	`CTGA`	`GACA`	`TGATGA`	`GGGAGTGACGGA`	`CTGA`	`CCGTTGGCTA`
Pfu sR60	`ACTTACCGGG`	`ATGAGGA`	`ATTCAGCCTAAG`	`CTGA`	`AGTA`	`TGATGA`	`GGGAGTGACGGA`	`CTGA`	`CCGCAA-AGAG`
Pab sR60	`CCGGATCGGG`	`ATGAGGA`	`GTTCAGCCTAGG`	`CTGA`	`GGCG`	`TGATGA`	`GGGAGTGACGGA`	`CTGA`	`CCGATTTAGA`