Aeropyrum pernix sRNA Annotation

Name Guide Box Target RNA Target Position Match/Mismatch
sR1  D 23S G2018 12/1
  D
tRNA Leu-GAG, -CAG,
-TAG, -TAA, Ser-GCT
G18
9/0
sR2  D' 23S G2411 11/0
  D 23S U2755 11/1
sR3  D' 16S G1379 11/1
  D 16S G594 10/1
  D
23S
G1679
10/1
sR4  D' 23S G2498 11/1
  D'
23S
G137
11/0
  D
16S
G862
11/0
sR5 D'
tRNA Leu-GAG, -CAG,
-TAG, -TAA, 1 type undet
U46
11/0
  D
16S
U638
11/1
  D
16S
U764
10/0
sR6 D'
16S
A499
12/0
  D
16S
U477
12/0
sR7 D'
23S
G2075
11/1
  D
23S
G2118
11/0
sR8 D'
23S
C1449
9/1
  D'
16 tRNAs incl. 2 Glu, 3 Ala, 
His, Cys, 2 Gln, 5 Leu, 
Gly-GCC, 1 type undet
C61
10/0, 9/1
  D
16S
G1356
8/0
sR9 D'
23S
C2562
12/0
sR10 D'
16S
U839
12/0
sR11 D'
23S
G1089
10/1
  D'
23S
G2074
9/1
  D
23S
A2106
12/0
sR12 D
23S
G769
10/0
sR13 D'
23S
A2326
10/0
  D
23S
U2773
9/0
sR14 D'
16S
G931
11/0
sR15 D'
16S
G854
11/1
sR16 D'
16S
C517
11/1
  D
16S
C486
11/1
sR17 D 
19 tRNAs incl.  2 Met, Ile,
2 Lys (YTT), 5 Arg, 3 Ala,
3 Thr, Phe, Tyr, His
G10 
13/0 
sR18 D'
16S
A496
12/0
  D
23S
G310
12/0
  D
23S
G1746
9/1
sR19 D
23S
U2714
12/0
sR20 D'
23S
G2651
12/1
  D
23S
G2632
11/0
  D
16S
G314
10/0
sR21 D'
tRNA Lys-TTT
U34
11/0
  D
23S
C2162
11/0
  D
23S
C2862
10/0
sR22 D'
16S
C588
11/1
   D'
23S
C2234
11/1
  D
23S
G2761
10/0
sR23 D'
16S
G1157
10/1
  D'
23S
G838
11/1

None of the Ape predictions have been verified as RNA transcripts by primer extension. Guide Box: the position of the guide within the sRNA (D or D' box associated). Target RNA: predicted target of methylation. Target Position: predicted nucleotide postion of methylation. Match/Mismatch: the number of Watson-Crick and G-U matches / mismatches within the sRNA-target RNA duplex.