F GtRNAdb
The Functional Genomics tRNA Database
From genes to evolution, modification, and expression: a comprehensive tRNA resource
Data Release 22 (Sept 2024)
To access the previous releases of GtRNAdb or check out the change log, please click here
Links to Most Viewed Genomes
Additional tRNA Tools
| tDRnamer - standardized naming for tRNA-derived RNAs |
| tRAX - tRNA and tRNA-derived RNA sequencing data analysis package |
| tRNAscan-SE web server and source code |
| tRAP - tRNA gene Activity Predictor |
tRNA Gene Activity Predictions
| Gene activity in 29 mammals including human and mouse were predicted using tRAP. |
| Details of the prediction method are available in the manuscript. Thornlow BP, Armstrong J, et al. Predicting transfer RNA gene activity from sequence and genome context. Genome Res. 2020. 30: 85-94. |
Gene Prediction Summary
| Domain | Number of Genomes | Number of tRNA Genes* |
|---|---|---|
| Eukaryota | 609 | 178,889 |
| Archaea | 220 | 10,476 |
| Bacteria | 4,038 | 242,068 |
* Predicted pseudogenes are not included. For large eukaryotes, primary and secondary filtered predictions are not included.
Modification Annotation Summary
| Domain | Genomes with Annotations | Unique Isodecoders |
|---|---|---|
| Eukaryota | 290 | 1,907 |
| Archaea | 32 | 76 |
| Bacteria | 1,938 | 610 |
Total tRNA genes with modification annotations: 89,438. Source: MODOMICS