Lowe Lab — tRNA Bioinformatics

Development & Testing Server
⚠ Development server. Sites hosted here are under active development and may be temporarily unavailable or unstable. For production resources, visit trna.ucsc.edu.
Web Applications

GtRNAdb

Genomic tRNA Database — browse tRNA genes across thousands of genomes with detailed annotations and structure diagrams.

Django + Static

tRNAviz

Interactive visualization of tRNA sequence features, conservation patterns, and comparative analysis across species.

Django + MySQL

tRNAscan-SE

Web server for tRNA gene detection — submit sequences for analysis using the widely-used tRNAscan-SE program.

CGI Application

tDRnamer

Standardized naming and annotation of tRNA-derived small RNA fragments (tDRs) from sequencing data.

CGI Application
Additional Resources

tRAX

tRNA Analysis of eXpression — pipeline and documentation for tRNA-seq data processing.

Documentation

snoRNAdb

Small nucleolar RNA database with annotations for snoRNA genes across multiple organisms.

Static Archive
The Lowe Lab  ·  Biomolecular Engineering, University of California Santa Cruz
trna-dev.ucsc.edu